Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2451

Experiment: MoYLS4 with methylglyoxal 0.0156 %

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2450 and DvMF_2451 are separated by 81 nucleotidesDvMF_2451 and DvMF_R0069 are separated by 198 nucleotidesDvMF_R0069 and DvMF_2452 are separated by 398 nucleotides DvMF_2450: DvMF_2450 - ComEC/Rec2-related protein (RefSeq), at 3,084,977 to 3,088,279 _2450 DvMF_2451: DvMF_2451 - UDP-N-acetylglucosamine 1-carboxyvinyltransferase (RefSeq), at 3,088,361 to 3,089,614 _2451 DvMF_R0069: DvMF_R0069 - tRNA-His (RefSeq), at 3,089,813 to 3,089,888 _R0069 DvMF_2452: DvMF_2452 - multi-sensor hybrid histidine kinase (RefSeq), at 3,090,287 to 3,093,820 _2452 Position (kb) 3088 3089 3090Strain fitness (log2 ratio) -1 0 1at 3087.500 kb on + strand, within DvMF_2450at 3087.509 kb on - strand, within DvMF_2450at 3088.342 kb on - strandat 3089.679 kb on - strandat 3090.234 kb on - strandat 3090.274 kb on - strandat 3090.562 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with methylglyoxal 0.0156 %
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3,087,500 + DvMF_2450 0.76 -0.8
3,087,509 - DvMF_2450 0.77 -1.2
3,088,342 - -0.8
3,089,679 - -1.0
3,090,234 - -0.4
3,090,274 - -1.1
3,090,562 + +0.4

Or see this region's nucleotide sequence