Experiment: MoYLS4 with methylglyoxal 0.0156 %
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_2433 and DvMF_2434 overlap by 22 nucleotides DvMF_2434 and DvMF_2435 are separated by 47 nucleotides DvMF_2435 and DvMF_2436 are separated by 3 nucleotides DvMF_2436 and DvMF_2437 are separated by 11 nucleotides
DvMF_2433: DvMF_2433 - hypothetical protein (RefSeq), at 3,068,833 to 3,069,570
_2433
DvMF_2434: DvMF_2434 - type III secretion system protein (RefSeq), at 3,069,549 to 3,070,166
_2434
DvMF_2435: DvMF_2435 - type III secretion system ATPase (RefSeq), at 3,070,214 to 3,071,530
_2435
DvMF_2436: DvMF_2436 - type III secretion YscO fmaily protein (RefSeq), at 3,071,534 to 3,072,037
_2436
DvMF_2437: DvMF_2437 - type III secretion system needle length determinant (RefSeq), at 3,072,049 to 3,072,813
_2437
Position (kb)
3070
3071
3072 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3069.371 kb on + strand, within DvMF_2433 at 3069.627 kb on + strand, within DvMF_2434 at 3069.633 kb on - strand, within DvMF_2434 at 3069.704 kb on + strand, within DvMF_2434 at 3070.269 kb on + strand at 3070.292 kb on + strand at 3070.332 kb on + strand at 3070.340 kb on - strand at 3070.617 kb on - strand, within DvMF_2435 at 3070.650 kb on + strand, within DvMF_2435 at 3070.650 kb on + strand, within DvMF_2435 at 3070.658 kb on - strand, within DvMF_2435 at 3070.658 kb on - strand, within DvMF_2435 at 3070.742 kb on + strand, within DvMF_2435 at 3070.950 kb on + strand, within DvMF_2435 at 3071.345 kb on + strand, within DvMF_2435 at 3071.454 kb on - strand at 3071.512 kb on + strand at 3071.634 kb on + strand, within DvMF_2436 at 3071.674 kb on - strand, within DvMF_2436 at 3071.761 kb on + strand, within DvMF_2436 at 3071.761 kb on + strand, within DvMF_2436 at 3071.769 kb on - strand, within DvMF_2436 at 3071.835 kb on + strand, within DvMF_2436 at 3071.902 kb on + strand, within DvMF_2436 at 3071.986 kb on + strand, within DvMF_2436 at 3071.994 kb on - strand at 3071.994 kb on - strand at 3072.167 kb on + strand, within DvMF_2437 at 3072.292 kb on - strand, within DvMF_2437 at 3072.470 kb on + strand, within DvMF_2437
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with methylglyoxal 0.0156 % remove 3,069,371 + DvMF_2433 0.73 -1.5 3,069,627 + DvMF_2434 0.13 -0.8 3,069,633 - DvMF_2434 0.14 -0.2 3,069,704 + DvMF_2434 0.25 -0.6 3,070,269 + -1.4 3,070,292 + -0.5 3,070,332 + -0.2 3,070,340 - -1.0 3,070,617 - DvMF_2435 0.31 -2.1 3,070,650 + DvMF_2435 0.33 -1.8 3,070,650 + DvMF_2435 0.33 -1.8 3,070,658 - DvMF_2435 0.34 -0.3 3,070,658 - DvMF_2435 0.34 -1.0 3,070,742 + DvMF_2435 0.40 -0.7 3,070,950 + DvMF_2435 0.56 -0.1 3,071,345 + DvMF_2435 0.86 -0.6 3,071,454 - -0.4 3,071,512 + -0.1 3,071,634 + DvMF_2436 0.20 -1.5 3,071,674 - DvMF_2436 0.28 -0.8 3,071,761 + DvMF_2436 0.45 -0.9 3,071,761 + DvMF_2436 0.45 -0.9 3,071,769 - DvMF_2436 0.47 +0.1 3,071,835 + DvMF_2436 0.60 -1.6 3,071,902 + DvMF_2436 0.73 +0.3 3,071,986 + DvMF_2436 0.90 +0.0 3,071,994 - -3.3 3,071,994 - -0.6 3,072,167 + DvMF_2437 0.15 -0.2 3,072,292 - DvMF_2437 0.32 -1.3 3,072,470 + DvMF_2437 0.55 -0.8
Or see this region's nucleotide sequence