Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2216

Experiment: MoYLS4 with methylglyoxal 0.0156 %

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntfliP and DvMF_2216 are separated by 13 nucleotidesDvMF_2216 and DvMF_2217 are separated by 179 nucleotides DvMF_2215: fliP - flagellar biosynthesis protein FliP (RefSeq), at 2,767,902 to 2,768,783 fliP DvMF_2216: DvMF_2216 - flagellar biosynthetic protein FliQ (RefSeq), at 2,768,797 to 2,769,066 _2216 DvMF_2217: DvMF_2217 - tRNA/rRNA methyltransferase (SpoU) (RefSeq), at 2,769,246 to 2,770,280 _2217 Position (kb) 2768 2769 2770Strain fitness (log2 ratio) -1 0 1at 2767.854 kb on + strandat 2768.096 kb on + strand, within fliPat 2768.133 kb on - strand, within fliPat 2768.133 kb on - strand, within fliPat 2768.136 kb on + strand, within fliPat 2768.299 kb on - strand, within fliPat 2768.315 kb on - strand, within fliPat 2768.466 kb on - strand, within fliPat 2768.575 kb on + strand, within fliPat 2768.892 kb on - strand, within DvMF_2216at 2769.297 kb on - strandat 2769.309 kb on - strandat 2769.353 kb on - strand, within DvMF_2217at 2769.617 kb on - strand, within DvMF_2217at 2770.026 kb on - strand, within DvMF_2217at 2770.026 kb on - strand, within DvMF_2217

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with methylglyoxal 0.0156 %
remove
2,767,854 + +1.4
2,768,096 + fliP DvMF_2215 0.22 +1.3
2,768,133 - fliP DvMF_2215 0.26 +1.1
2,768,133 - fliP DvMF_2215 0.26 +1.4
2,768,136 + fliP DvMF_2215 0.27 +1.2
2,768,299 - fliP DvMF_2215 0.45 +1.4
2,768,315 - fliP DvMF_2215 0.47 +1.3
2,768,466 - fliP DvMF_2215 0.64 +1.2
2,768,575 + fliP DvMF_2215 0.76 +1.3
2,768,892 - DvMF_2216 0.35 +1.4
2,769,297 - -1.1
2,769,309 - -0.8
2,769,353 - DvMF_2217 0.10 +0.4
2,769,617 - DvMF_2217 0.36 -1.0
2,770,026 - DvMF_2217 0.75 -1.1
2,770,026 - DvMF_2217 0.75 +0.0

Or see this region's nucleotide sequence