Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2063

Experiment: MoYLS4 with methylglyoxal 0.0156 %

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2062 and DvMF_2063 are separated by 268 nucleotidesDvMF_2063 and DvMF_2064 are separated by 173 nucleotidesDvMF_2064 and DvMF_2065 are separated by 227 nucleotides DvMF_2062: DvMF_2062 - ABC transporter related (RefSeq), at 2,557,436 to 2,558,158 _2062 DvMF_2063: DvMF_2063 - protein of unknown function DUF214 (RefSeq), at 2,558,427 to 2,559,620 _2063 DvMF_2064: DvMF_2064 - hypothetical protein (RefSeq), at 2,559,794 to 2,560,255 _2064 DvMF_2065: DvMF_2065 - ybaK/ebsC protein (RefSeq), at 2,560,483 to 2,560,947 _2065 Position (kb) 2558 2559 2560Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2557.485 kb on - strandat 2557.525 kb on - strand, within DvMF_2062at 2557.529 kb on + strand, within DvMF_2062at 2557.594 kb on + strand, within DvMF_2062at 2557.632 kb on + strand, within DvMF_2062at 2557.657 kb on - strand, within DvMF_2062at 2557.664 kb on + strand, within DvMF_2062at 2557.771 kb on + strand, within DvMF_2062at 2557.962 kb on + strand, within DvMF_2062at 2558.154 kb on - strandat 2558.558 kb on + strand, within DvMF_2063at 2558.585 kb on - strand, within DvMF_2063at 2558.654 kb on - strand, within DvMF_2063at 2558.758 kb on - strand, within DvMF_2063at 2558.841 kb on - strand, within DvMF_2063at 2558.866 kb on + strand, within DvMF_2063at 2558.866 kb on + strand, within DvMF_2063at 2558.874 kb on - strand, within DvMF_2063at 2558.959 kb on - strand, within DvMF_2063at 2559.210 kb on + strand, within DvMF_2063at 2559.270 kb on - strand, within DvMF_2063at 2559.614 kb on - strandat 2559.924 kb on + strand, within DvMF_2064at 2559.983 kb on - strand, within DvMF_2064at 2560.352 kb on - strandat 2560.401 kb on - strandat 2560.512 kb on + strandat 2560.608 kb on - strand, within DvMF_2065

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with methylglyoxal 0.0156 %
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2,557,485 - -1.2
2,557,525 - DvMF_2062 0.12 -0.5
2,557,529 + DvMF_2062 0.13 -0.4
2,557,594 + DvMF_2062 0.22 -1.0
2,557,632 + DvMF_2062 0.27 -0.7
2,557,657 - DvMF_2062 0.31 -1.0
2,557,664 + DvMF_2062 0.32 +0.4
2,557,771 + DvMF_2062 0.46 +0.5
2,557,962 + DvMF_2062 0.73 -1.0
2,558,154 - -0.1
2,558,558 + DvMF_2063 0.11 -0.3
2,558,585 - DvMF_2063 0.13 -0.2
2,558,654 - DvMF_2063 0.19 -1.8
2,558,758 - DvMF_2063 0.28 +0.0
2,558,841 - DvMF_2063 0.35 -1.6
2,558,866 + DvMF_2063 0.37 -0.7
2,558,866 + DvMF_2063 0.37 -0.8
2,558,874 - DvMF_2063 0.37 -0.6
2,558,959 - DvMF_2063 0.45 -1.3
2,559,210 + DvMF_2063 0.66 -4.0
2,559,270 - DvMF_2063 0.71 -0.9
2,559,614 - -0.6
2,559,924 + DvMF_2064 0.28 -1.6
2,559,983 - DvMF_2064 0.41 -1.0
2,560,352 - +0.6
2,560,401 - -0.1
2,560,512 + -0.0
2,560,608 - DvMF_2065 0.27 -1.5

Or see this region's nucleotide sequence