Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1623

Experiment: MoYLS4 with methylglyoxal 0.0156 %

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1622 and DvMF_1623 are separated by 246 nucleotidesDvMF_1623 and DvMF_1624 are separated by 286 nucleotides DvMF_1622: DvMF_1622 - flagellin domain protein (RefSeq), at 2,000,204 to 2,001,091 _1622 DvMF_1623: DvMF_1623 - RNA polymerase, sigma-24 subunit, ECF subfamily (RefSeq), at 2,001,338 to 2,001,949 _1623 DvMF_1624: DvMF_1624 - two component transcriptional regulator, winged helix family (RefSeq), at 2,002,236 to 2,003,072 _1624 Position (kb) 2001 2002Strain fitness (log2 ratio) -2 -1 0 1at 2000.429 kb on + strand, within DvMF_1622at 2000.482 kb on - strand, within DvMF_1622at 2000.633 kb on + strand, within DvMF_1622at 2001.369 kb on + strandat 2001.396 kb on + strandat 2001.447 kb on + strand, within DvMF_1623at 2001.678 kb on - strand, within DvMF_1623at 2001.694 kb on + strand, within DvMF_1623at 2001.701 kb on + strand, within DvMF_1623at 2001.747 kb on - strand, within DvMF_1623at 2001.788 kb on - strand, within DvMF_1623at 2002.422 kb on - strand, within DvMF_1624at 2002.467 kb on - strand, within DvMF_1624at 2002.675 kb on + strand, within DvMF_1624at 2002.751 kb on - strand, within DvMF_1624at 2002.769 kb on - strand, within DvMF_1624at 2002.854 kb on + strand, within DvMF_1624at 2002.860 kb on - strand, within DvMF_1624at 2002.860 kb on - strand, within DvMF_1624

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with methylglyoxal 0.0156 %
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2,000,429 + DvMF_1622 0.25 -0.8
2,000,482 - DvMF_1622 0.31 -0.8
2,000,633 + DvMF_1622 0.48 -0.3
2,001,369 + -2.5
2,001,396 + -0.7
2,001,447 + DvMF_1623 0.18 +0.8
2,001,678 - DvMF_1623 0.56 +0.4
2,001,694 + DvMF_1623 0.58 -1.1
2,001,701 + DvMF_1623 0.59 -0.4
2,001,747 - DvMF_1623 0.67 -0.4
2,001,788 - DvMF_1623 0.74 -0.5
2,002,422 - DvMF_1624 0.22 -0.1
2,002,467 - DvMF_1624 0.28 -0.6
2,002,675 + DvMF_1624 0.52 +0.4
2,002,751 - DvMF_1624 0.62 -1.0
2,002,769 - DvMF_1624 0.64 -0.8
2,002,854 + DvMF_1624 0.74 -0.6
2,002,860 - DvMF_1624 0.75 -0.6
2,002,860 - DvMF_1624 0.75 -0.4

Or see this region's nucleotide sequence