Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1489

Experiment: MoYLS4 with methylglyoxal 0.0156 %

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1488 and DvMF_1489 are separated by 131 nucleotidesDvMF_1489 and DvMF_1490 are separated by 578 nucleotides DvMF_1488: DvMF_1488 - protein of unknown function DUF1063 (RefSeq), at 1,825,362 to 1,826,702 _1488 DvMF_1489: DvMF_1489 - Lysine exporter protein (LYSE/YGGA) (RefSeq), at 1,826,834 to 1,827,526 _1489 DvMF_1490: DvMF_1490 - Nitrite reductase (cytochrome; ammonia-forming) (RefSeq), at 1,828,105 to 1,829,694 _1490 Position (kb) 1826 1827 1828Strain fitness (log2 ratio) -3 -2 -1 0 1at 1825.896 kb on + strand, within DvMF_1488at 1826.181 kb on - strand, within DvMF_1488at 1826.187 kb on + strand, within DvMF_1488at 1826.195 kb on - strand, within DvMF_1488at 1826.285 kb on - strand, within DvMF_1488at 1827.313 kb on - strand, within DvMF_1489at 1827.417 kb on + strand, within DvMF_1489at 1827.758 kb on + strandat 1827.771 kb on + strandat 1827.857 kb on - strandat 1828.221 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with methylglyoxal 0.0156 %
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1,825,896 + DvMF_1488 0.40 -0.5
1,826,181 - DvMF_1488 0.61 -1.8
1,826,187 + DvMF_1488 0.62 -3.3
1,826,195 - DvMF_1488 0.62 -1.2
1,826,285 - DvMF_1488 0.69 +0.9
1,827,313 - DvMF_1489 0.69 -0.4
1,827,417 + DvMF_1489 0.84 -0.3
1,827,758 + -0.9
1,827,771 + -1.8
1,827,857 - -0.5
1,828,221 - -0.1

Or see this region's nucleotide sequence