Experiment: MoYLS4 with methylglyoxal 0.0156 %
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1214 and DvMF_1215 are separated by 879 nucleotides DvMF_1215 and DvMF_1216 are separated by 374 nucleotides
DvMF_1214: DvMF_1214 - methyl-accepting chemotaxis sensory transducer (RefSeq), at 1,493,709 to 1,495,361
_1214
DvMF_1215: DvMF_1215 - molybdopterin-guanine dinucleotide biosynthesis protein B (RefSeq), at 1,496,241 to 1,496,951
_1215
DvMF_1216: DvMF_1216 - formate dehydrogenase, beta subunit, putative (RefSeq), at 1,497,326 to 1,498,033
_1216
Position (kb)
1496
1497 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1495.355 kb on + strand at 1495.451 kb on + strand at 1495.503 kb on + strand at 1495.612 kb on + strand at 1495.805 kb on - strand at 1495.811 kb on - strand at 1495.842 kb on - strand at 1496.305 kb on + strand at 1496.313 kb on - strand, within DvMF_1215 at 1496.315 kb on - strand, within DvMF_1215 at 1496.452 kb on - strand, within DvMF_1215 at 1496.454 kb on + strand, within DvMF_1215 at 1496.509 kb on + strand, within DvMF_1215 at 1496.515 kb on - strand, within DvMF_1215 at 1496.636 kb on + strand, within DvMF_1215 at 1496.737 kb on + strand, within DvMF_1215 at 1496.745 kb on - strand, within DvMF_1215 at 1496.745 kb on - strand, within DvMF_1215 at 1496.777 kb on - strand, within DvMF_1215 at 1496.835 kb on - strand, within DvMF_1215 at 1497.152 kb on + strand at 1497.326 kb on - strand at 1497.326 kb on - strand at 1497.444 kb on - strand, within DvMF_1216 at 1497.559 kb on + strand, within DvMF_1216 at 1497.820 kb on + strand, within DvMF_1216
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with methylglyoxal 0.0156 % remove 1,495,355 + -1.3 1,495,451 + -0.7 1,495,503 + -3.3 1,495,612 + -0.0 1,495,805 - -0.2 1,495,811 - -0.7 1,495,842 - -0.6 1,496,305 + +2.9 1,496,313 - DvMF_1215 0.10 -0.5 1,496,315 - DvMF_1215 0.10 -0.9 1,496,452 - DvMF_1215 0.30 -0.2 1,496,454 + DvMF_1215 0.30 -0.0 1,496,509 + DvMF_1215 0.38 -0.7 1,496,515 - DvMF_1215 0.39 -1.4 1,496,636 + DvMF_1215 0.56 -1.0 1,496,737 + DvMF_1215 0.70 -0.1 1,496,745 - DvMF_1215 0.71 -0.1 1,496,745 - DvMF_1215 0.71 -0.8 1,496,777 - DvMF_1215 0.75 -0.7 1,496,835 - DvMF_1215 0.84 -1.1 1,497,152 + -0.0 1,497,326 - +0.5 1,497,326 - -0.5 1,497,444 - DvMF_1216 0.17 -0.9 1,497,559 + DvMF_1216 0.33 -0.9 1,497,820 + DvMF_1216 0.70 -2.1
Or see this region's nucleotide sequence