Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1174

Experiment: MoYLS4 with methylglyoxal 0.0156 %

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1172 and DvMF_1173 are separated by 148 nucleotidesDvMF_1173 and DvMF_1174 are separated by 340 nucleotidesDvMF_1174 and DvMF_1175 overlap by 4 nucleotides DvMF_1172: DvMF_1172 - Rhodanese domain protein (RefSeq), at 1,449,223 to 1,449,744 _1172 DvMF_1173: DvMF_1173 - hypothetical protein (RefSeq), at 1,449,893 to 1,450,369 _1173 DvMF_1174: DvMF_1174 - cobalamin (vitamin B12) biosynthesis CbiD protein (RefSeq), at 1,450,710 to 1,452,059 _1174 DvMF_1175: DvMF_1175 - precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit (RefSeq), at 1,452,056 to 1,453,480 _1175 Position (kb) 1450 1451 1452 1453Strain fitness (log2 ratio) -3 -2 -1 0 1at 1449.952 kb on + strand, within DvMF_1173at 1449.960 kb on - strand, within DvMF_1173at 1450.004 kb on + strand, within DvMF_1173at 1450.200 kb on - strand, within DvMF_1173at 1450.872 kb on - strand, within DvMF_1174at 1451.043 kb on - strand, within DvMF_1174at 1451.337 kb on - strand, within DvMF_1174at 1451.614 kb on + strand, within DvMF_1174at 1451.646 kb on - strand, within DvMF_1174at 1451.717 kb on - strand, within DvMF_1174at 1451.907 kb on - strand, within DvMF_1174at 1453.053 kb on + strand, within DvMF_1175

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with methylglyoxal 0.0156 %
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1,449,952 + DvMF_1173 0.12 -1.4
1,449,960 - DvMF_1173 0.14 -1.3
1,450,004 + DvMF_1173 0.23 -0.2
1,450,200 - DvMF_1173 0.64 +1.0
1,450,872 - DvMF_1174 0.12 -1.5
1,451,043 - DvMF_1174 0.25 -2.8
1,451,337 - DvMF_1174 0.46 -3.7
1,451,614 + DvMF_1174 0.67 -3.3
1,451,646 - DvMF_1174 0.69 -2.5
1,451,717 - DvMF_1174 0.75 -2.7
1,451,907 - DvMF_1174 0.89 -1.9
1,453,053 + DvMF_1175 0.70 -3.2

Or see this region's nucleotide sequence