Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0871

Experiment: MoYLS4 with methylglyoxal 0.0156 %

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0870 and DvMF_0871 are separated by 160 nucleotidesDvMF_0871 and DvMF_0872 are separated by 52 nucleotidesDvMF_0872 and DvMF_0873 are separated by 331 nucleotides DvMF_0870: DvMF_0870 - RNA binding S1 domain protein (RefSeq), at 1,047,322 to 1,049,592 _0870 DvMF_0871: DvMF_0871 - hypothetical protein (RefSeq), at 1,049,753 to 1,052,377 _0871 DvMF_0872: DvMF_0872 - hypothetical protein (RefSeq), at 1,052,430 to 1,052,792 _0872 DvMF_0873: DvMF_0873 - nuclease (SNase domain protein) (RefSeq), at 1,053,124 to 1,053,564 _0873 Position (kb) 1049 1050 1051 1052 1053Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1048.839 kb on + strand, within DvMF_0870at 1048.873 kb on + strand, within DvMF_0870at 1048.916 kb on - strand, within DvMF_0870at 1048.968 kb on - strand, within DvMF_0870at 1049.137 kb on - strand, within DvMF_0870at 1049.240 kb on + strand, within DvMF_0870at 1049.240 kb on + strand, within DvMF_0870at 1049.248 kb on - strand, within DvMF_0870at 1049.515 kb on + strandat 1049.829 kb on - strandat 1049.845 kb on + strandat 1049.954 kb on - strandat 1049.954 kb on - strandat 1050.310 kb on - strand, within DvMF_0871at 1050.658 kb on + strand, within DvMF_0871at 1050.673 kb on + strand, within DvMF_0871at 1050.772 kb on - strand, within DvMF_0871at 1050.887 kb on + strand, within DvMF_0871at 1050.895 kb on - strand, within DvMF_0871at 1051.186 kb on + strand, within DvMF_0871at 1051.279 kb on + strand, within DvMF_0871at 1051.295 kb on - strand, within DvMF_0871at 1051.318 kb on + strand, within DvMF_0871at 1052.122 kb on - strandat 1052.136 kb on + strandat 1052.154 kb on + strandat 1052.725 kb on - strand, within DvMF_0872at 1052.758 kb on - strandat 1052.995 kb on + strandat 1053.027 kb on + strandat 1053.275 kb on + strand, within DvMF_0873at 1053.327 kb on + strand, within DvMF_0873at 1053.364 kb on - strand, within DvMF_0873

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with methylglyoxal 0.0156 %
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1,048,839 + DvMF_0870 0.67 -0.3
1,048,873 + DvMF_0870 0.68 -0.5
1,048,916 - DvMF_0870 0.70 -0.2
1,048,968 - DvMF_0870 0.72 -0.4
1,049,137 - DvMF_0870 0.80 -0.4
1,049,240 + DvMF_0870 0.84 -0.2
1,049,240 + DvMF_0870 0.84 -0.1
1,049,248 - DvMF_0870 0.85 -1.7
1,049,515 + +0.8
1,049,829 - +2.6
1,049,845 + -1.6
1,049,954 - +0.4
1,049,954 - +0.1
1,050,310 - DvMF_0871 0.21 -1.3
1,050,658 + DvMF_0871 0.34 -0.2
1,050,673 + DvMF_0871 0.35 +0.2
1,050,772 - DvMF_0871 0.39 +0.8
1,050,887 + DvMF_0871 0.43 -0.1
1,050,895 - DvMF_0871 0.44 -0.2
1,051,186 + DvMF_0871 0.55 -0.8
1,051,279 + DvMF_0871 0.58 -0.1
1,051,295 - DvMF_0871 0.59 -0.6
1,051,318 + DvMF_0871 0.60 -1.2
1,052,122 - -0.1
1,052,136 + -0.6
1,052,154 + -0.5
1,052,725 - DvMF_0872 0.81 -3.7
1,052,758 - -0.8
1,052,995 + -0.6
1,053,027 + -0.5
1,053,275 + DvMF_0873 0.34 -1.2
1,053,327 + DvMF_0873 0.46 -0.8
1,053,364 - DvMF_0873 0.54 -0.4

Or see this region's nucleotide sequence