Experiment: MoYLS4 with methylglyoxal 0.0156 %
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0722 and DvMF_0723 are separated by 2 nucleotides DvMF_0723 and DvMF_0724 overlap by 1 nucleotides DvMF_0724 and DvMF_0725 overlap by 4 nucleotides DvMF_0725 and DvMF_0726 are separated by 13 nucleotides DvMF_0726 and DvMF_0727 are separated by 1 nucleotides DvMF_0727 and DvMF_0728 overlap by 4 nucleotides
DvMF_0722: DvMF_0722 - phage-related membrane protein (RefSeq), at 872,838 to 873,209
_0722
DvMF_0723: DvMF_0723 - Lytic transglycosylase catalytic (RefSeq), at 873,212 to 874,000
_0723
DvMF_0724: DvMF_0724 - hypothetical protein (RefSeq), at 874,000 to 874,695
_0724
DvMF_0725: DvMF_0725 - hypothetical protein (RefSeq), at 874,692 to 874,958
_0725
DvMF_0726: DvMF_0726 - hypothetical protein (RefSeq), at 874,972 to 875,187
_0726
DvMF_0727: DvMF_0727 - Protein of unknown function DUF1804 (RefSeq), at 875,189 to 875,695
_0727
DvMF_0728: DvMF_0728 - phage uncharacterized protein (RefSeq), at 875,692 to 877,368
_0728
Position (kb) 873
874
875 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 873.242 kb on - strand at 873.362 kb on - strand, within DvMF_0723 at 873.473 kb on + strand, within DvMF_0723 at 873.476 kb on - strand, within DvMF_0723 at 873.478 kb on + strand, within DvMF_0723 at 873.594 kb on + strand, within DvMF_0723 at 873.667 kb on + strand, within DvMF_0723 at 873.714 kb on + strand, within DvMF_0723 at 873.807 kb on + strand, within DvMF_0723 at 874.183 kb on + strand, within DvMF_0724 at 874.333 kb on + strand, within DvMF_0724 at 874.391 kb on - strand, within DvMF_0724 at 874.640 kb on + strand at 874.659 kb on + strand at 874.738 kb on - strand, within DvMF_0725 at 874.761 kb on + strand, within DvMF_0725 at 875.181 kb on - strand at 875.183 kb on - strand at 875.207 kb on + strand at 875.236 kb on - strand at 875.314 kb on + strand, within DvMF_0727 at 875.422 kb on + strand, within DvMF_0727 at 875.422 kb on + strand, within DvMF_0727
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with methylglyoxal 0.0156 % remove 873,242 - -1.2 873,362 - DvMF_0723 0.19 -0.0 873,473 + DvMF_0723 0.33 -1.7 873,476 - DvMF_0723 0.33 +0.7 873,478 + DvMF_0723 0.34 -0.5 873,594 + DvMF_0723 0.48 -1.2 873,667 + DvMF_0723 0.58 -0.4 873,714 + DvMF_0723 0.64 -0.5 873,807 + DvMF_0723 0.75 -0.9 874,183 + DvMF_0724 0.26 +0.6 874,333 + DvMF_0724 0.48 +0.4 874,391 - DvMF_0724 0.56 +0.2 874,640 + -1.3 874,659 + +0.4 874,738 - DvMF_0725 0.17 -3.5 874,761 + DvMF_0725 0.26 +0.2 875,181 - -1.6 875,183 - -1.5 875,207 + -0.5 875,236 - -0.7 875,314 + DvMF_0727 0.25 -0.6 875,422 + DvMF_0727 0.46 +1.0 875,422 + DvMF_0727 0.46 -0.6
Or see this region's nucleotide sequence