Experiment: MoYLS4 with methylglyoxal 0.0156 %
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0693 and DvMF_0694 are separated by 125 nucleotides DvMF_0694 and DvMF_0695 are separated by 177 nucleotides DvMF_0695 and DvMF_0696 are separated by 20 nucleotides
DvMF_0693: DvMF_0693 - protein of unknown function DUF1555 (RefSeq), at 840,610 to 841,473
_0693
DvMF_0694: DvMF_0694 - protein of unknown function DUF1555 (RefSeq), at 841,599 to 842,453
_0694
DvMF_0695: DvMF_0695 - CAAX prenyl protease-related protein (RefSeq), at 842,631 to 843,341
_0695
DvMF_0696: DvMF_0696 - secretion protein HlyD family protein (RefSeq), at 843,362 to 844,423
_0696
Position (kb) 841
842
843 Strain fitness (log2 ratio) -2
-1
0
1 at 840.707 kb on - strand, within DvMF_0693 at 841.205 kb on - strand, within DvMF_0693 at 841.369 kb on + strand, within DvMF_0693 at 841.392 kb on - strand at 841.763 kb on + strand, within DvMF_0694 at 842.196 kb on + strand, within DvMF_0694 at 842.275 kb on + strand, within DvMF_0694 at 842.432 kb on - strand at 842.448 kb on + strand at 842.711 kb on + strand, within DvMF_0695 at 842.750 kb on - strand, within DvMF_0695 at 842.786 kb on + strand, within DvMF_0695 at 842.849 kb on - strand, within DvMF_0695 at 843.005 kb on - strand, within DvMF_0695 at 843.188 kb on - strand, within DvMF_0695
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with methylglyoxal 0.0156 % remove 840,707 - DvMF_0693 0.11 -1.1 841,205 - DvMF_0693 0.69 +0.2 841,369 + DvMF_0693 0.88 -1.4 841,392 - -0.2 841,763 + DvMF_0694 0.19 +0.4 842,196 + DvMF_0694 0.70 -0.9 842,275 + DvMF_0694 0.79 -0.8 842,432 - -0.3 842,448 + -2.2 842,711 + DvMF_0695 0.11 -0.8 842,750 - DvMF_0695 0.17 -2.2 842,786 + DvMF_0695 0.22 +0.2 842,849 - DvMF_0695 0.31 -0.8 843,005 - DvMF_0695 0.53 +0.7 843,188 - DvMF_0695 0.78 -1.3
Or see this region's nucleotide sequence