Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0368

Experiment: MoYLS4 with methylglyoxal 0.0156 %

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0367 and DvMF_0368 are separated by 112 nucleotidesDvMF_0368 and DvMF_0369 are separated by 734 nucleotides DvMF_0367: DvMF_0367 - ABC transporter related (RefSeq), at 431,158 to 433,014 _0367 DvMF_0368: DvMF_0368 - hypothetical protein (RefSeq), at 433,127 to 433,771 _0368 DvMF_0369: DvMF_0369 - pseudouridine synthase (RefSeq), at 434,506 to 435,261 _0369 Position (kb) 433 434Strain fitness (log2 ratio) -1 0 1at 433.164 kb on + strandat 433.183 kb on - strandat 433.230 kb on - strand, within DvMF_0368at 433.282 kb on + strand, within DvMF_0368at 433.282 kb on + strand, within DvMF_0368at 433.284 kb on + strand, within DvMF_0368at 433.290 kb on - strand, within DvMF_0368at 433.290 kb on - strand, within DvMF_0368at 433.418 kb on - strand, within DvMF_0368at 433.473 kb on + strand, within DvMF_0368at 433.539 kb on + strand, within DvMF_0368at 433.607 kb on - strand, within DvMF_0368at 433.612 kb on - strand, within DvMF_0368at 433.646 kb on - strand, within DvMF_0368at 433.673 kb on - strand, within DvMF_0368at 433.711 kb on - strandat 433.853 kb on + strandat 433.907 kb on + strandat 434.045 kb on + strandat 434.076 kb on + strandat 434.102 kb on - strandat 434.104 kb on - strandat 434.371 kb on - strandat 434.589 kb on + strand, within DvMF_0369at 434.590 kb on - strand, within DvMF_0369at 434.635 kb on - strand, within DvMF_0369at 434.635 kb on - strand, within DvMF_0369at 434.642 kb on + strand, within DvMF_0369

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with methylglyoxal 0.0156 %
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433,164 + +0.1
433,183 - +0.1
433,230 - DvMF_0368 0.16 -0.5
433,282 + DvMF_0368 0.24 +0.0
433,282 + DvMF_0368 0.24 -0.9
433,284 + DvMF_0368 0.24 -0.2
433,290 - DvMF_0368 0.25 +0.2
433,290 - DvMF_0368 0.25 -0.7
433,418 - DvMF_0368 0.45 -0.2
433,473 + DvMF_0368 0.54 -0.5
433,539 + DvMF_0368 0.64 -0.2
433,607 - DvMF_0368 0.74 -0.3
433,612 - DvMF_0368 0.75 -0.2
433,646 - DvMF_0368 0.80 +0.8
433,673 - DvMF_0368 0.85 -0.7
433,711 - -0.2
433,853 + -1.0
433,907 + +0.3
434,045 + -0.8
434,076 + -0.6
434,102 - -1.2
434,104 - -0.7
434,371 - -0.1
434,589 + DvMF_0369 0.11 -0.6
434,590 - DvMF_0369 0.11 -1.7
434,635 - DvMF_0369 0.17 -0.5
434,635 - DvMF_0369 0.17 +0.1
434,642 + DvMF_0369 0.18 +1.3

Or see this region's nucleotide sequence