Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0220

Experiment: MoYLS4 with methylglyoxal 0.0156 %

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDvMF_0219 and DvMF_0220 are separated by 362 nucleotidesDvMF_0220 and DvMF_0221 are separated by 66 nucleotides DvMF_0219: DvMF_0219 - Peroxiredoxin (RefSeq), at 245,544 to 246,170 _0219 DvMF_0220: DvMF_0220 - hypothetical protein (RefSeq), at 246,533 to 247,135 _0220 DvMF_0221: DvMF_0221 - OmpA/MotB domain protein (RefSeq), at 247,202 to 248,239 _0221 Position (kb) 246 247 248Strain fitness (log2 ratio) -3 -2 -1 0 1at 245.654 kb on + strand, within DvMF_0219at 245.725 kb on + strand, within DvMF_0219at 245.728 kb on - strand, within DvMF_0219at 245.761 kb on + strand, within DvMF_0219at 245.983 kb on - strand, within DvMF_0219at 245.988 kb on + strand, within DvMF_0219at 246.015 kb on - strand, within DvMF_0219at 246.450 kb on - strandat 246.709 kb on + strand, within DvMF_0220at 246.873 kb on - strand, within DvMF_0220at 247.439 kb on - strand, within DvMF_0221at 248.075 kb on - strand, within DvMF_0221at 248.107 kb on + strand, within DvMF_0221

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with methylglyoxal 0.0156 %
remove
245,654 + DvMF_0219 0.18 +0.2
245,725 + DvMF_0219 0.29 -1.2
245,728 - DvMF_0219 0.29 +1.0
245,761 + DvMF_0219 0.35 -0.5
245,983 - DvMF_0219 0.70 -0.8
245,988 + DvMF_0219 0.71 -1.1
246,015 - DvMF_0219 0.75 -0.8
246,450 - -2.5
246,709 + DvMF_0220 0.29 -1.1
246,873 - DvMF_0220 0.56 -1.3
247,439 - DvMF_0221 0.23 +0.8
248,075 - DvMF_0221 0.84 -3.0
248,107 + DvMF_0221 0.87 -1.2

Or see this region's nucleotide sequence