Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0202

Experiment: MoYLS4 with methylglyoxal 0.0156 %

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0200 and DvMF_0201 are separated by 189 nucleotidesDvMF_0201 and DvMF_0202 are separated by 88 nucleotidesDvMF_0202 and DvMF_0203 are separated by 237 nucleotides DvMF_0200: DvMF_0200 - Radical SAM domain protein (RefSeq), at 217,942 to 219,102 _0200 DvMF_0201: DvMF_0201 - hypothetical protein (RefSeq), at 219,292 to 219,768 _0201 DvMF_0202: DvMF_0202 - phosphoribosylaminoimidazole synthetase (RefSeq), at 219,857 to 220,909 _0202 DvMF_0203: DvMF_0203 - Radical SAM domain protein (RefSeq), at 221,147 to 222,682 _0203 Position (kb) 219 220 221Strain fitness (log2 ratio) -3 -2 -1 0 1at 218.860 kb on - strand, within DvMF_0200at 218.995 kb on - strandat 219.184 kb on + strandat 219.325 kb on + strandat 219.333 kb on - strandat 219.886 kb on - strandat 219.958 kb on + strandat 220.270 kb on + strand, within DvMF_0202at 220.816 kb on - strandat 220.979 kb on + strandat 220.992 kb on - strandat 220.992 kb on - strandat 220.992 kb on - strandat 221.002 kb on - strandat 221.110 kb on + strandat 221.118 kb on - strandat 221.230 kb on - strandat 221.322 kb on - strand, within DvMF_0203at 221.796 kb on - strand, within DvMF_0203

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with methylglyoxal 0.0156 %
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218,860 - DvMF_0200 0.79 -1.1
218,995 - -0.8
219,184 + +1.7
219,325 + -0.2
219,333 - -0.4
219,886 - -0.5
219,958 + -1.9
220,270 + DvMF_0202 0.39 -3.4
220,816 - -1.3
220,979 + -1.4
220,992 - +1.6
220,992 - -0.5
220,992 - -0.3
221,002 - +0.3
221,110 + -0.9
221,118 - -1.5
221,230 - -0.8
221,322 - DvMF_0203 0.11 -0.6
221,796 - DvMF_0203 0.42 +0.4

Or see this region's nucleotide sequence