Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0139

Experiment: MoYLS4 with methylglyoxal 0.0156 %

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0138 and DvMF_0139 are separated by 10 nucleotidesDvMF_0139 and DvMF_0140 are separated by 66 nucleotidesDvMF_0140 and DvMF_0141 overlap by 4 nucleotides DvMF_0138: DvMF_0138 - lipid-A-disaccharide synthase (RefSeq), at 154,079 to 155,311 _0138 DvMF_0139: DvMF_0139 - nucleoside recognition domain protein (RefSeq), at 155,322 to 156,305 _0139 DvMF_0140: DvMF_0140 - dTDP-4-dehydrorhamnose reductase (RefSeq), at 156,372 to 157,253 _0140 DvMF_0141: DvMF_0141 - dTDP-glucose 4,6-dehydratase (RefSeq), at 157,250 to 158,272 _0141 Position (kb) 155 156 157Strain fitness (log2 ratio) -2 -1 0 1at 156.069 kb on - strand, within DvMF_0139at 156.222 kb on - strandat 156.322 kb on + strandat 156.793 kb on - strand, within DvMF_0140at 156.815 kb on - strand, within DvMF_0140at 156.851 kb on + strand, within DvMF_0140at 157.138 kb on - strand, within DvMF_0140

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with methylglyoxal 0.0156 %
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156,069 - DvMF_0139 0.76 +0.5
156,222 - -0.0
156,322 + +0.1
156,793 - DvMF_0140 0.48 +0.2
156,815 - DvMF_0140 0.50 -2.2
156,851 + DvMF_0140 0.54 +0.5
157,138 - DvMF_0140 0.87 +0.4

Or see this region's nucleotide sequence