Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0136

Experiment: MoYLS4 with methylglyoxal 0.0156 %

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDvMF_0134 and DvMF_0135 are separated by 113 nucleotidesDvMF_0135 and DvMF_0136 overlap by 1 nucleotidesDvMF_0136 and DvMF_0137 are separated by 247 nucleotides DvMF_0134: DvMF_0134 - hypothetical protein (RefSeq), at 149,783 to 150,322 _0134 DvMF_0135: DvMF_0135 - Haloacid dehalogenase domain protein hydrolase (RefSeq), at 150,436 to 151,254 _0135 DvMF_0136: DvMF_0136 - hypothetical protein (RefSeq), at 151,254 to 152,498 _0136 DvMF_0137: DvMF_0137 - UDP-glucose 4-epimerase (RefSeq), at 152,746 to 153,816 _0137 Position (kb) 151 152 153Strain fitness (log2 ratio) -2 -1 0 1 2at 150.362 kb on - strandat 150.410 kb on - strandat 150.426 kb on + strandat 150.545 kb on - strand, within DvMF_0135at 150.705 kb on - strand, within DvMF_0135at 150.801 kb on + strand, within DvMF_0135at 151.032 kb on + strand, within DvMF_0135at 151.045 kb on + strand, within DvMF_0135at 151.045 kb on + strand, within DvMF_0135at 151.334 kb on - strandat 151.433 kb on - strand, within DvMF_0136at 151.500 kb on - strand, within DvMF_0136at 151.521 kb on + strand, within DvMF_0136at 151.521 kb on + strand, within DvMF_0136at 151.561 kb on + strand, within DvMF_0136at 151.561 kb on + strand, within DvMF_0136at 151.588 kb on - strand, within DvMF_0136at 151.593 kb on + strand, within DvMF_0136at 151.717 kb on - strand, within DvMF_0136at 151.758 kb on - strand, within DvMF_0136at 151.776 kb on - strand, within DvMF_0136at 151.863 kb on - strand, within DvMF_0136at 152.025 kb on + strand, within DvMF_0136at 152.119 kb on - strand, within DvMF_0136at 152.129 kb on - strand, within DvMF_0136at 152.406 kb on - strandat 152.732 kb on + strandat 152.775 kb on + strandat 152.793 kb on - strandat 152.867 kb on - strand, within DvMF_0137at 153.031 kb on + strand, within DvMF_0137at 153.142 kb on - strand, within DvMF_0137at 153.364 kb on + strand, within DvMF_0137at 153.421 kb on - strand, within DvMF_0137

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with methylglyoxal 0.0156 %
remove
150,362 - -0.0
150,410 - -2.1
150,426 + -1.1
150,545 - DvMF_0135 0.13 -1.6
150,705 - DvMF_0135 0.33 +0.0
150,801 + DvMF_0135 0.45 -0.7
151,032 + DvMF_0135 0.73 -0.7
151,045 + DvMF_0135 0.74 -0.3
151,045 + DvMF_0135 0.74 -1.2
151,334 - +0.1
151,433 - DvMF_0136 0.14 -1.0
151,500 - DvMF_0136 0.20 -0.7
151,521 + DvMF_0136 0.21 -0.5
151,521 + DvMF_0136 0.21 -0.6
151,561 + DvMF_0136 0.25 -0.3
151,561 + DvMF_0136 0.25 +1.1
151,588 - DvMF_0136 0.27 -0.3
151,593 + DvMF_0136 0.27 +0.1
151,717 - DvMF_0136 0.37 -0.4
151,758 - DvMF_0136 0.40 +0.5
151,776 - DvMF_0136 0.42 -0.9
151,863 - DvMF_0136 0.49 -0.2
152,025 + DvMF_0136 0.62 -0.2
152,119 - DvMF_0136 0.69 +0.3
152,129 - DvMF_0136 0.70 -0.6
152,406 - -0.8
152,732 + -0.6
152,775 + -2.0
152,793 - +0.8
152,867 - DvMF_0137 0.11 -0.2
153,031 + DvMF_0137 0.27 +1.7
153,142 - DvMF_0137 0.37 +2.4
153,364 + DvMF_0137 0.58 +1.2
153,421 - DvMF_0137 0.63 -1.2

Or see this region's nucleotide sequence