Experiment: MoYLS4 with methylglyoxal 0.0156 %
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0030 and DvMF_0031 are separated by 298 nucleotides DvMF_0031 and DvMF_0032 are separated by 276 nucleotides DvMF_0032 and DvMF_0033 are separated by 120 nucleotides
DvMF_0030: DvMF_0030 - hypothetical protein (RefSeq), at 38,598 to 38,939
_0030
DvMF_0031: DvMF_0031 - hypothetical protein (RefSeq), at 39,238 to 39,513
_0031
DvMF_0032: DvMF_0032 - diguanylate cyclase (RefSeq), at 39,790 to 41,526
_0032
DvMF_0033: DvMF_0033 - no description, at 41,647 to 43,079
_0033
Position (kb) 39
40
41
42 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 38.913 kb on - strand at 38.931 kb on + strand at 38.996 kb on - strand at 39.227 kb on - strand at 39.295 kb on + strand, within DvMF_0031 at 39.303 kb on - strand, within DvMF_0031 at 39.765 kb on + strand at 39.774 kb on + strand at 39.798 kb on + strand at 40.082 kb on - strand, within DvMF_0032 at 40.170 kb on - strand, within DvMF_0032 at 40.287 kb on + strand, within DvMF_0032 at 40.327 kb on - strand, within DvMF_0032 at 40.591 kb on + strand, within DvMF_0032 at 40.670 kb on - strand, within DvMF_0032 at 40.869 kb on - strand, within DvMF_0032 at 41.020 kb on - strand, within DvMF_0032 at 41.023 kb on + strand, within DvMF_0032 at 41.052 kb on - strand, within DvMF_0032 at 41.074 kb on + strand, within DvMF_0032 at 41.858 kb on - strand, within DvMF_0033 at 41.879 kb on + strand, within DvMF_0033 at 41.879 kb on + strand, within DvMF_0033 at 41.879 kb on + strand, within DvMF_0033 at 41.879 kb on + strand, within DvMF_0033 at 41.879 kb on + strand, within DvMF_0033 at 41.879 kb on + strand, within DvMF_0033 at 41.887 kb on - strand, within DvMF_0033 at 41.887 kb on - strand, within DvMF_0033 at 41.887 kb on - strand, within DvMF_0033 at 41.912 kb on - strand, within DvMF_0033 at 41.943 kb on - strand, within DvMF_0033 at 41.950 kb on - strand, within DvMF_0033 at 42.315 kb on - strand, within DvMF_0033 at 42.387 kb on + strand, within DvMF_0033 at 42.388 kb on + strand, within DvMF_0033 at 42.396 kb on - strand, within DvMF_0033 at 42.396 kb on - strand, within DvMF_0033 at 42.438 kb on - strand, within DvMF_0033
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with methylglyoxal 0.0156 % remove 38,913 - -0.3 38,931 + -0.4 38,996 - -4.7 39,227 - +0.2 39,295 + DvMF_0031 0.21 -0.6 39,303 - DvMF_0031 0.24 -0.2 39,765 + +1.4 39,774 + -0.1 39,798 + -1.7 40,082 - DvMF_0032 0.17 -1.3 40,170 - DvMF_0032 0.22 -0.7 40,287 + DvMF_0032 0.29 -0.1 40,327 - DvMF_0032 0.31 -0.9 40,591 + DvMF_0032 0.46 -2.3 40,670 - DvMF_0032 0.51 -3.1 40,869 - DvMF_0032 0.62 -1.2 41,020 - DvMF_0032 0.71 -1.9 41,023 + DvMF_0032 0.71 -1.4 41,052 - DvMF_0032 0.73 -2.1 41,074 + DvMF_0032 0.74 -0.3 41,858 - DvMF_0033 0.15 -0.3 41,879 + DvMF_0033 0.16 +0.4 41,879 + DvMF_0033 0.16 -0.8 41,879 + DvMF_0033 0.16 +1.2 41,879 + DvMF_0033 0.16 -3.7 41,879 + DvMF_0033 0.16 -0.4 41,879 + DvMF_0033 0.16 -0.1 41,887 - DvMF_0033 0.17 -0.8 41,887 - DvMF_0033 0.17 -0.7 41,887 - DvMF_0033 0.17 -0.4 41,912 - DvMF_0033 0.18 -0.1 41,943 - DvMF_0033 0.21 +0.3 41,950 - DvMF_0033 0.21 -0.9 42,315 - DvMF_0033 0.47 -3.6 42,387 + DvMF_0033 0.52 -0.6 42,388 + DvMF_0033 0.52 -0.7 42,396 - DvMF_0033 0.52 -0.8 42,396 - DvMF_0033 0.52 -0.8 42,438 - DvMF_0033 0.55 -0.8
Or see this region's nucleotide sequence