Strain Fitness in Shewanella loihica PV-4 around Shew_2403

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_2401 and Shew_2402 overlap by 1 nucleotidesShew_2402 and Shew_2403 are separated by 34 nucleotidesShew_2403 and Shew_2404 are separated by 569 nucleotides Shew_2401: Shew_2401 - hypothetical protein (RefSeq), at 2,815,269 to 2,817,719 _2401 Shew_2402: Shew_2402 - ABC transporter-related protein (RefSeq), at 2,817,719 to 2,818,459 _2402 Shew_2403: Shew_2403 - arylesterase (RefSeq), at 2,818,494 to 2,819,087 _2403 Shew_2404: Shew_2404 - hypothetical protein (RefSeq), at 2,819,657 to 2,822,308 _2404 Position (kb) 2818 2819 2820Strain fitness (log2 ratio) -1 0 1at 2818.063 kb on - strand, within Shew_2402at 2818.410 kb on - strandat 2818.883 kb on + strand, within Shew_2403at 2818.996 kb on - strand, within Shew_2403at 2819.104 kb on + strandat 2819.104 kb on + strandat 2819.377 kb on + strandat 2819.684 kb on + strandat 2819.917 kb on + strandat 2819.917 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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2,818,063 - Shew_2402 0.46 +0.2
2,818,410 - +0.6
2,818,883 + Shew_2403 0.65 -0.7
2,818,996 - Shew_2403 0.85 -0.0
2,819,104 + +0.2
2,819,104 + +0.1
2,819,377 + +0.2
2,819,684 + +0.2
2,819,917 + -0.3
2,819,917 + +0.2

Or see this region's nucleotide sequence