Strain Fitness in Shewanella loihica PV-4 around Shew_2052

Experiment: LB

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntShew_2051 and Shew_2052 are separated by 8 nucleotidesShew_2052 and Shew_2053 are separated by 219 nucleotides Shew_2051: Shew_2051 - acyl-CoA dehydrogenase (RefSeq), at 2,368,011 to 2,370,287 _2051 Shew_2052: Shew_2052 - TetR family transcriptional regulator (RefSeq), at 2,370,296 to 2,370,934 _2052 Shew_2053: Shew_2053 - peptidyl-dipeptidase A (RefSeq), at 2,371,154 to 2,373,058 _2053 Position (kb) 2370 2371Strain fitness (log2 ratio) -1 0 1at 2369.616 kb on - strand, within Shew_2051at 2370.059 kb on + strand, within Shew_2051at 2370.067 kb on - strandat 2370.273 kb on + strandat 2370.418 kb on - strand, within Shew_2052at 2370.593 kb on + strand, within Shew_2052at 2371.661 kb on + strand, within Shew_2053at 2371.689 kb on + strand, within Shew_2053

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB
remove
2,369,616 - Shew_2051 0.70 -0.1
2,370,059 + Shew_2051 0.90 -1.7
2,370,067 - +0.2
2,370,273 + +0.0
2,370,418 - Shew_2052 0.19 +0.0
2,370,593 + Shew_2052 0.46 -1.3
2,371,661 + Shew_2053 0.27 +0.1
2,371,689 + Shew_2053 0.28 -0.1

Or see this region's nucleotide sequence