Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_2035 and Shew_2036 are separated by 208 nucleotides Shew_2036 and Shew_2037 are separated by 28 nucleotides Shew_2037 and Shew_R0069 are separated by 230 nucleotides Shew_R0069 and Shew_R0070 are separated by 20 nucleotides Shew_R0070 and Shew_2038 are separated by 61 nucleotides
Shew_2035: Shew_2035 - hypothetical protein (RefSeq), at 2,347,930 to 2,348,130
_2035
Shew_2036: Shew_2036 - riboflavin synthase subunit alpha (RefSeq), at 2,348,339 to 2,348,950
_2036
Shew_2037: Shew_2037 - MATE efflux family protein (RefSeq), at 2,348,979 to 2,350,364
_2037
Shew_R0069: Shew_R0069 - tRNA-Val (RefSeq), at 2,350,595 to 2,350,671
_R0069
Shew_R0070: Shew_R0070 - tRNA-Val (RefSeq), at 2,350,692 to 2,350,768
_R0070
Shew_2038: Shew_2038 - hypothetical protein (RefSeq), at 2,350,830 to 2,351,273
_2038
Position (kb)
2348
2349
2350
2351 Strain fitness (log2 ratio)
-1
0
1
2 at 2348.021 kb on - strand, within Shew_2035 at 2348.094 kb on + strand, within Shew_2035 at 2348.099 kb on + strand, within Shew_2035 at 2348.316 kb on + strand at 2348.355 kb on + strand at 2348.375 kb on + strand at 2348.500 kb on + strand, within Shew_2036 at 2348.515 kb on + strand, within Shew_2036 at 2348.515 kb on + strand, within Shew_2036 at 2348.523 kb on - strand, within Shew_2036 at 2348.534 kb on + strand, within Shew_2036 at 2348.708 kb on - strand, within Shew_2036 at 2348.865 kb on - strand, within Shew_2036 at 2348.971 kb on - strand at 2349.848 kb on + strand, within Shew_2037 at 2349.940 kb on + strand, within Shew_2037 at 2350.141 kb on + strand, within Shew_2037 at 2350.267 kb on + strand at 2350.270 kb on - strand at 2351.032 kb on - strand, within Shew_2038
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 2,348,021 - Shew_2035 0.45 +2.2 2,348,094 + Shew_2035 0.82 +0.9 2,348,099 + Shew_2035 0.84 +0.3 2,348,316 + +0.8 2,348,355 + -0.0 2,348,375 + +0.2 2,348,500 + Shew_2036 0.26 -0.2 2,348,515 + Shew_2036 0.29 +0.1 2,348,515 + Shew_2036 0.29 +0.1 2,348,523 - Shew_2036 0.30 +0.3 2,348,534 + Shew_2036 0.32 +0.3 2,348,708 - Shew_2036 0.60 +0.0 2,348,865 - Shew_2036 0.86 +0.4 2,348,971 - +0.1 2,349,848 + Shew_2037 0.63 +0.1 2,349,940 + Shew_2037 0.69 -1.1 2,350,141 + Shew_2037 0.84 +0.1 2,350,267 + -0.1 2,350,270 - -0.5 2,351,032 - Shew_2038 0.45 -0.1
Or see this region's nucleotide sequence