Strain Fitness in Shewanella loihica PV-4 around Shew_1681

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_1679 and Shew_1680 are separated by 128 nucleotidesShew_1680 and Shew_1681 are separated by 218 nucleotidesShew_1681 and Shew_1682 are separated by 42 nucleotidesShew_1682 and Shew_1683 are separated by 30 nucleotides Shew_1679: Shew_1679 - TetR family transcriptional regulator (RefSeq), at 1,930,027 to 1,930,584 _1679 Shew_1680: Shew_1680 - HPP family protein+B94 (RefSeq), at 1,930,713 to 1,931,183 _1680 Shew_1681: Shew_1681 - diguanylate cyclase with PAS/PAC sensor (RefSeq), at 1,931,402 to 1,932,892 _1681 Shew_1682: Shew_1682 - ribonuclease H (RefSeq), at 1,932,935 to 1,933,699 _1682 Shew_1683: Shew_1683 - hypothetical protein (RefSeq), at 1,933,730 to 1,934,305 _1683 Position (kb) 1931 1932 1933Strain fitness (log2 ratio) -1 0 1at 1930.689 kb on + strandat 1931.364 kb on + strandat 1931.420 kb on - strandat 1931.776 kb on + strand, within Shew_1681at 1932.603 kb on - strand, within Shew_1681at 1933.016 kb on + strand, within Shew_1682at 1933.258 kb on + strand, within Shew_1682

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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1,930,689 + -0.1
1,931,364 + -0.0
1,931,420 - -0.1
1,931,776 + Shew_1681 0.25 -0.1
1,932,603 - Shew_1681 0.81 -0.8
1,933,016 + Shew_1682 0.11 -0.7
1,933,258 + Shew_1682 0.42 -1.2

Or see this region's nucleotide sequence