Strain Fitness in Shewanella loihica PV-4 around Shew_1629

Experiment: LB

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntShew_1627 and Shew_1628 are separated by 556 nucleotidesShew_1628 and Shew_1629 are separated by 39 nucleotidesShew_1629 and Shew_1630 overlap by 8 nucleotides Shew_1627: Shew_1627 - hypothetical protein (RefSeq), at 1,860,554 to 1,861,096 _1627 Shew_1628: Shew_1628 - acylphosphatase (RefSeq), at 1,861,653 to 1,861,922 _1628 Shew_1629: Shew_1629 - hypothetical protein (RefSeq), at 1,861,962 to 1,862,900 _1629 Shew_1630: Shew_1630 - transcription-repair coupling factor (RefSeq), at 1,862,893 to 1,866,375 _1630 Position (kb) 1861 1862 1863Strain fitness (log2 ratio) -1 0 1at 1860.999 kb on - strand, within Shew_1627at 1861.693 kb on - strand, within Shew_1628at 1862.387 kb on - strand, within Shew_1629

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB
remove
1,860,999 - Shew_1627 0.82 +0.2
1,861,693 - Shew_1628 0.15 +0.3
1,862,387 - Shew_1629 0.45 +0.4

Or see this region's nucleotide sequence