Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_1615 and Shew_1616 overlap by 4 nucleotides Shew_1616 and Shew_1617 are separated by 56 nucleotides Shew_1617 and Shew_1618 are separated by 99 nucleotides
Shew_1615: Shew_1615 - ABC transporter-related protein (RefSeq), at 1,846,913 to 1,847,818
_1615
Shew_1616: Shew_1616 - hypothetical protein (RefSeq), at 1,847,815 to 1,848,669
_1616
Shew_1617: Shew_1617 - hypothetical protein (RefSeq), at 1,848,726 to 1,849,373
_1617
Shew_1618: Shew_1618 - hypothetical protein (RefSeq), at 1,849,473 to 1,850,306
_1618
Position (kb) 1847
1848
1849 Strain fitness (log2 ratio) -1
0
1 at 1846.816 kb on + strand at 1846.944 kb on - strand at 1847.380 kb on - strand, within Shew_1615 at 1847.562 kb on - strand, within Shew_1615 at 1847.892 kb on + strand at 1848.020 kb on + strand, within Shew_1616 at 1848.035 kb on + strand, within Shew_1616 at 1848.615 kb on - strand at 1848.644 kb on - strand at 1848.954 kb on - strand, within Shew_1617 at 1849.277 kb on - strand, within Shew_1617
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,846,816 + +0.0 1,846,944 - -0.4 1,847,380 - Shew_1615 0.52 -0.2 1,847,562 - Shew_1615 0.72 +0.0 1,847,892 + +0.1 1,848,020 + Shew_1616 0.24 -0.1 1,848,035 + Shew_1616 0.26 -0.6 1,848,615 - +0.1 1,848,644 - -0.0 1,848,954 - Shew_1617 0.35 +0.1 1,849,277 - Shew_1617 0.85 -0.0
Or see this region's nucleotide sequence