Strain Fitness in Shewanella loihica PV-4 around Shew_1531

Experiment: LB

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntShew_1530 and grxA are separated by 53 nucleotidesgrxA and Shew_1532 are separated by 65 nucleotides Shew_1530: Shew_1530 - porin (RefSeq), at 1,754,711 to 1,755,853 _1530 Shew_1531: grxA - glutaredoxin 1 (RefSeq), at 1,755,907 to 1,756,164 grxA Shew_1532: Shew_1532 - type III restriction enzyme, res subunit (RefSeq), at 1,756,230 to 1,757,969 _1532 Position (kb) 1755 1756 1757Strain fitness (log2 ratio) -1 0 1at 1754.996 kb on - strand, within Shew_1530at 1755.354 kb on - strand, within Shew_1530at 1755.730 kb on + strand, within Shew_1530at 1755.756 kb on - strandat 1755.767 kb on + strandat 1756.001 kb on + strand, within grxAat 1756.124 kb on - strand, within grxAat 1756.206 kb on - strandat 1757.147 kb on + strand, within Shew_1532at 1757.157 kb on + strand, within Shew_1532at 1757.160 kb on - strand, within Shew_1532

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB
remove
1,754,996 - Shew_1530 0.25 +0.2
1,755,354 - Shew_1530 0.56 +0.3
1,755,730 + Shew_1530 0.89 +0.8
1,755,756 - +0.3
1,755,767 + -0.4
1,756,001 + grxA Shew_1531 0.36 -0.7
1,756,124 - grxA Shew_1531 0.84 -1.3
1,756,206 - -0.5
1,757,147 + Shew_1532 0.53 +0.2
1,757,157 + Shew_1532 0.53 +0.1
1,757,160 - Shew_1532 0.53 +0.1

Or see this region's nucleotide sequence