Strain Fitness in Shewanella loihica PV-4 around Shew_1502
Experiment: LB
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | LB |
---|---|---|---|---|---|
remove | |||||
1,721,587 | - | Shew_1500 | 0.42 | +0.3 | |
1,721,721 | - | Shew_1500 | 0.75 | +0.3 | |
1,722,563 | + | -0.4 | |||
1,723,016 | - | Shew_1502 | 0.16 | -0.1 | |
1,723,016 | - | Shew_1502 | 0.16 | -0.4 | |
1,723,245 | + | Shew_1502 | 0.23 | -0.6 | |
1,723,253 | - | Shew_1502 | 0.23 | -0.7 | |
1,723,655 | - | Shew_1502 | 0.35 | -0.2 | |
1,723,655 | - | Shew_1502 | 0.35 | -0.4 | |
1,724,257 | - | Shew_1502 | 0.53 | -0.7 | |
1,724,295 | - | Shew_1502 | 0.54 | -0.3 | |
1,724,594 | + | Shew_1502 | 0.63 | -0.1 | |
1,725,425 | - | Shew_1502 | 0.88 | -0.4 | |
1,725,501 | - | -0.4 | |||
1,725,892 | + | -0.1 | |||
1,726,012 | + | -0.1 | |||
1,726,067 | - | +0.1 | |||
1,726,067 | - | -0.1 | |||
1,726,183 | + | Shew_1503 | 0.18 | +0.0 |
Or see this region's nucleotide sequence