Strain Fitness in Shewanella loihica PV-4 around Shew_1502

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_1500 and Shew_1501 are separated by 84 nucleotidesShew_1501 and Shew_1502 are separated by 212 nucleotidesShew_1502 and Shew_1503 are separated by 170 nucleotides Shew_1500: Shew_1500 - signal transduction protein (RefSeq), at 1,721,417 to 1,721,821 _1500 Shew_1501: Shew_1501 - glutaredoxin (RefSeq), at 1,721,906 to 1,722,262 _1501 Shew_1502: Shew_1502 - hypothetical protein (RefSeq), at 1,722,475 to 1,725,834 _1502 Shew_1503: Shew_1503 - oxidoreductase FAD-binding subunit (RefSeq), at 1,726,005 to 1,726,997 _1503 Position (kb) 1722 1723 1724 1725 1726Strain fitness (log2 ratio) -1 0 1at 1721.587 kb on - strand, within Shew_1500at 1721.721 kb on - strand, within Shew_1500at 1722.563 kb on + strandat 1723.016 kb on - strand, within Shew_1502at 1723.016 kb on - strand, within Shew_1502at 1723.245 kb on + strand, within Shew_1502at 1723.253 kb on - strand, within Shew_1502at 1723.655 kb on - strand, within Shew_1502at 1723.655 kb on - strand, within Shew_1502at 1724.257 kb on - strand, within Shew_1502at 1724.295 kb on - strand, within Shew_1502at 1724.594 kb on + strand, within Shew_1502at 1725.425 kb on - strand, within Shew_1502at 1725.501 kb on - strandat 1725.892 kb on + strandat 1726.012 kb on + strandat 1726.067 kb on - strandat 1726.067 kb on - strandat 1726.183 kb on + strand, within Shew_1503

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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1,721,587 - Shew_1500 0.42 +0.3
1,721,721 - Shew_1500 0.75 +0.3
1,722,563 + -0.4
1,723,016 - Shew_1502 0.16 -0.1
1,723,016 - Shew_1502 0.16 -0.4
1,723,245 + Shew_1502 0.23 -0.6
1,723,253 - Shew_1502 0.23 -0.7
1,723,655 - Shew_1502 0.35 -0.2
1,723,655 - Shew_1502 0.35 -0.4
1,724,257 - Shew_1502 0.53 -0.7
1,724,295 - Shew_1502 0.54 -0.3
1,724,594 + Shew_1502 0.63 -0.1
1,725,425 - Shew_1502 0.88 -0.4
1,725,501 - -0.4
1,725,892 + -0.1
1,726,012 + -0.1
1,726,067 - +0.1
1,726,067 - -0.1
1,726,183 + Shew_1503 0.18 +0.0

Or see this region's nucleotide sequence