Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU0947

Experiment: Lactate-Sulfate (60-30 mM) + 0.1% Yeast Extract (MoYLS4)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU0946 and DVU0947 are separated by 55 nucleotidesDVU0947 and DVU0948 are separated by 175 nucleotidesDVU0948 and DVU0949 are separated by 47 nucleotides DVU0946: DVU0946 - sigma-54 dependent transcriptional regulator/response regulator (TIGR), at 1,039,992 to 1,041,422 DVU0946 DVU0947: DVU0947 - membrane protein, putative (TIGR), at 1,041,478 to 1,042,383 DVU0947 DVU0948: DVU0948 - conserved hypothetical protein (TIGR), at 1,042,559 to 1,042,987 DVU0948 DVU0949: DVU0949 - conserved domain protein (TIGR), at 1,043,035 to 1,043,796 DVU0949 Position (kb) 1041 1042 1043Strain fitness (log2 ratio) -1 0 1at 1040.656 kb on - strand, within DVU0946at 1040.656 kb on - strand, within DVU0946at 1040.660 kb on + strand, within DVU0946at 1040.785 kb on + strand, within DVU0946at 1041.023 kb on + strand, within DVU0946at 1041.151 kb on + strand, within DVU0946at 1041.324 kb on - strandat 1041.473 kb on + strandat 1041.625 kb on - strand, within DVU0947at 1041.665 kb on + strand, within DVU0947at 1041.704 kb on + strand, within DVU0947at 1041.714 kb on - strand, within DVU0947at 1041.714 kb on - strand, within DVU0947at 1041.716 kb on + strand, within DVU0947at 1041.734 kb on - strand, within DVU0947at 1041.772 kb on - strand, within DVU0947at 1041.863 kb on + strand, within DVU0947at 1041.869 kb on - strand, within DVU0947at 1041.972 kb on - strand, within DVU0947at 1042.006 kb on + strand, within DVU0947at 1042.011 kb on + strand, within DVU0947at 1042.272 kb on - strand, within DVU0947at 1042.286 kb on + strand, within DVU0947at 1042.296 kb on - strandat 1042.431 kb on + strandat 1042.512 kb on + strandat 1042.556 kb on - strandat 1042.564 kb on + strandat 1042.706 kb on + strand, within DVU0948at 1042.723 kb on + strand, within DVU0948at 1042.782 kb on + strand, within DVU0948at 1042.788 kb on + strand, within DVU0948at 1042.866 kb on - strand, within DVU0948at 1042.871 kb on - strand, within DVU0948at 1042.878 kb on - strand, within DVU0948at 1042.952 kb on - strandat 1043.032 kb on + strandat 1043.047 kb on + strandat 1043.047 kb on + strandat 1043.117 kb on - strand, within DVU0949at 1043.185 kb on - strand, within DVU0949at 1043.246 kb on + strand, within DVU0949at 1043.278 kb on - strand, within DVU0949at 1043.367 kb on - strand, within DVU0949

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Per-strain Table

Position Strand Gene LocusTag Fraction Lactate-Sulfate (60-30 mM) + 0.1% Yeast Extract (MoYLS4)
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1,040,656 - DVU0946 0.46 -0.1
1,040,656 - DVU0946 0.46 -0.1
1,040,660 + DVU0946 0.47 +1.1
1,040,785 + DVU0946 0.55 -0.0
1,041,023 + DVU0946 0.72 -1.4
1,041,151 + DVU0946 0.81 +0.6
1,041,324 - -1.5
1,041,473 + +0.1
1,041,625 - DVU0947 0.16 -0.1
1,041,665 + DVU0947 0.21 -0.0
1,041,704 + DVU0947 0.25 -0.0
1,041,714 - DVU0947 0.26 +0.2
1,041,714 - DVU0947 0.26 +0.2
1,041,716 + DVU0947 0.26 +0.4
1,041,734 - DVU0947 0.28 -0.5
1,041,772 - DVU0947 0.32 -1.2
1,041,863 + DVU0947 0.42 +0.1
1,041,869 - DVU0947 0.43 +1.2
1,041,972 - DVU0947 0.55 -0.2
1,042,006 + DVU0947 0.58 -1.5
1,042,011 + DVU0947 0.59 -0.2
1,042,272 - DVU0947 0.88 +0.4
1,042,286 + DVU0947 0.89 -1.3
1,042,296 - -1.2
1,042,431 + +0.4
1,042,512 + -1.1
1,042,556 - -0.1
1,042,564 + +0.5
1,042,706 + DVU0948 0.34 +0.2
1,042,723 + DVU0948 0.38 +0.0
1,042,782 + DVU0948 0.52 -1.1
1,042,788 + DVU0948 0.53 -0.5
1,042,866 - DVU0948 0.72 -0.8
1,042,871 - DVU0948 0.73 -0.3
1,042,878 - DVU0948 0.74 +0.4
1,042,952 - -0.1
1,043,032 + -0.3
1,043,047 + -0.1
1,043,047 + -1.7
1,043,117 - DVU0949 0.11 +0.5
1,043,185 - DVU0949 0.20 -1.2
1,043,246 + DVU0949 0.28 -0.4
1,043,278 - DVU0949 0.32 +0.1
1,043,367 - DVU0949 0.44 +0.2

Or see this region's nucleotide sequence