Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU0784

Experiment: Lactate-Sulfate (60-30 mM) + 0.1% Yeast Extract (MoYLS4)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntatpF1 and DVU0784 are separated by 797 nucleotidesDVU0784 and rodA are separated by 37 nucleotides DVU0780: atpF1 - ATP synthase F0, B subunit, putative (TIGR), at 869,792 to 870,187 atpF1 DVU0784: DVU0784 - conserved hypothetical protein (TIGR), at 870,985 to 871,332 DVU0784 DVU0785: rodA - rod shape-determining protein RodA (TIGR), at 871,370 to 872,485 rodA Position (kb) 870 871 872Strain fitness (log2 ratio) -2 -1 0 1at 870.577 kb on - strandat 870.622 kb on - strandat 870.648 kb on - strandat 870.649 kb on + strandat 870.657 kb on - strandat 870.823 kb on - strandat 870.982 kb on + strandat 870.982 kb on + strandat 871.006 kb on + strandat 871.015 kb on + strandat 871.148 kb on - strand, within DVU0784at 871.276 kb on - strand, within DVU0784at 871.278 kb on + strand, within DVU0784at 871.286 kb on - strand, within DVU0784at 871.293 kb on + strand, within DVU0784at 871.323 kb on - strandat 871.347 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Lactate-Sulfate (60-30 mM) + 0.1% Yeast Extract (MoYLS4)
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870,577 - -0.4
870,622 - +0.4
870,648 - -0.5
870,649 + -0.1
870,657 - +0.0
870,823 - +0.1
870,982 + -0.1
870,982 + +0.4
871,006 + +0.6
871,015 + +0.7
871,148 - DVU0784 0.47 -2.0
871,276 - DVU0784 0.84 -1.6
871,278 + DVU0784 0.84 -0.0
871,286 - DVU0784 0.86 -1.4
871,293 + DVU0784 0.89 -0.2
871,323 - -0.0
871,347 - -0.1

Or see this region's nucleotide sequence