Experiment: L-Malic Acid (C) and N2; anaerobic; high light
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A3713 and Rru_A3714 are separated by 166 nucleotides Rru_A3714 and Rru_A3715 are separated by 76 nucleotides Rru_A3715 and Rru_A3716 overlap by 10 nucleotides Rru_A3716 and Rru_A3717 overlap by 4 nucleotides
Rru_A3713: Rru_A3713 - Protein of unknown function DUF159 (NCBI), at 4,263,225 to 4,263,899
_A3713
Rru_A3714: Rru_A3714 - hypothetical protein (NCBI), at 4,264,066 to 4,264,443
_A3714
Rru_A3715: Rru_A3715 - Lipopolysaccharide biosynthesis (NCBI), at 4,264,520 to 4,266,658
_A3715
Rru_A3716: Rru_A3716 - Polysaccharide export protein (NCBI), at 4,266,649 to 4,267,374
_A3716
Rru_A3717: Rru_A3717 - Glycosyl transferase WecB/TagA/CpsF (NCBI), at 4,267,371 to 4,268,156
_A3717
Position (kb) 4264
4265
4266
4267 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4263.537 kb on + strand, within Rru_A3713 at 4263.537 kb on + strand, within Rru_A3713 at 4263.538 kb on - strand, within Rru_A3713 at 4263.538 kb on - strand, within Rru_A3713 at 4263.538 kb on - strand, within Rru_A3713 at 4263.538 kb on - strand, within Rru_A3713 at 4263.573 kb on + strand, within Rru_A3713 at 4263.574 kb on - strand, within Rru_A3713 at 4263.574 kb on - strand, within Rru_A3713 at 4263.574 kb on - strand, within Rru_A3713 at 4263.574 kb on - strand, within Rru_A3713 at 4263.578 kb on + strand, within Rru_A3713 at 4263.578 kb on + strand, within Rru_A3713 at 4263.579 kb on - strand, within Rru_A3713 at 4263.579 kb on - strand, within Rru_A3713 at 4264.195 kb on + strand, within Rru_A3714 at 4264.618 kb on - strand at 4264.677 kb on - strand at 4264.905 kb on - strand, within Rru_A3715 at 4265.182 kb on + strand, within Rru_A3715 at 4265.182 kb on + strand, within Rru_A3715 at 4265.182 kb on + strand, within Rru_A3715 at 4265.182 kb on + strand, within Rru_A3715 at 4265.182 kb on + strand, within Rru_A3715 at 4265.183 kb on - strand, within Rru_A3715 at 4265.183 kb on - strand, within Rru_A3715 at 4265.183 kb on - strand, within Rru_A3715 at 4265.183 kb on - strand, within Rru_A3715 at 4265.516 kb on + strand, within Rru_A3715 at 4265.516 kb on + strand, within Rru_A3715 at 4265.516 kb on + strand, within Rru_A3715 at 4265.516 kb on + strand, within Rru_A3715 at 4265.517 kb on - strand, within Rru_A3715 at 4265.517 kb on - strand, within Rru_A3715 at 4265.517 kb on - strand, within Rru_A3715 at 4265.517 kb on - strand, within Rru_A3715 at 4265.517 kb on - strand, within Rru_A3715 at 4265.517 kb on - strand, within Rru_A3715 at 4265.570 kb on + strand, within Rru_A3715 at 4265.570 kb on + strand, within Rru_A3715 at 4265.570 kb on + strand, within Rru_A3715 at 4265.571 kb on - strand, within Rru_A3715 at 4265.571 kb on - strand, within Rru_A3715 at 4265.571 kb on - strand, within Rru_A3715 at 4265.726 kb on + strand, within Rru_A3715 at 4265.726 kb on + strand, within Rru_A3715 at 4265.735 kb on + strand, within Rru_A3715 at 4265.735 kb on + strand, within Rru_A3715 at 4265.820 kb on - strand, within Rru_A3715 at 4265.820 kb on - strand, within Rru_A3715 at 4265.839 kb on + strand, within Rru_A3715 at 4265.839 kb on + strand, within Rru_A3715 at 4265.840 kb on - strand, within Rru_A3715 at 4265.840 kb on - strand, within Rru_A3715 at 4265.840 kb on - strand, within Rru_A3715 at 4265.840 kb on - strand, within Rru_A3715 at 4265.918 kb on + strand, within Rru_A3715 at 4265.918 kb on + strand, within Rru_A3715 at 4265.918 kb on + strand, within Rru_A3715 at 4265.919 kb on - strand, within Rru_A3715 at 4265.919 kb on - strand, within Rru_A3715 at 4266.041 kb on + strand, within Rru_A3715 at 4266.041 kb on + strand, within Rru_A3715 at 4266.041 kb on + strand, within Rru_A3715 at 4266.041 kb on + strand, within Rru_A3715 at 4266.042 kb on - strand, within Rru_A3715 at 4266.042 kb on - strand, within Rru_A3715 at 4266.042 kb on - strand, within Rru_A3715 at 4266.042 kb on - strand, within Rru_A3715 at 4266.042 kb on - strand, within Rru_A3715 at 4266.042 kb on - strand, within Rru_A3715 at 4266.431 kb on + strand, within Rru_A3715 at 4266.431 kb on + strand, within Rru_A3715 at 4266.431 kb on + strand, within Rru_A3715 at 4266.431 kb on + strand, within Rru_A3715 at 4266.432 kb on - strand, within Rru_A3715 at 4266.432 kb on - strand, within Rru_A3715 at 4266.432 kb on - strand, within Rru_A3715 at 4266.432 kb on - strand, within Rru_A3715 at 4266.488 kb on + strand at 4266.623 kb on + strand at 4266.624 kb on - strand at 4266.624 kb on - strand at 4266.626 kb on + strand at 4266.626 kb on + strand at 4266.626 kb on + strand at 4266.627 kb on - strand at 4266.627 kb on - strand at 4266.627 kb on - strand at 4266.627 kb on - strand at 4266.627 kb on - strand at 4266.627 kb on - strand at 4266.627 kb on - strand at 4266.627 kb on - strand at 4266.800 kb on - strand, within Rru_A3716 at 4266.800 kb on - strand, within Rru_A3716 at 4266.836 kb on - strand, within Rru_A3716 at 4267.164 kb on + strand, within Rru_A3716 at 4267.322 kb on - strand at 4267.360 kb on + strand at 4267.361 kb on - strand at 4267.361 kb on - strand at 4267.361 kb on - strand at 4267.361 kb on - strand at 4267.362 kb on + strand at 4267.362 kb on + strand at 4267.362 kb on + strand at 4267.362 kb on + strand at 4267.363 kb on - strand at 4267.419 kb on + strand at 4267.419 kb on + strand at 4267.420 kb on - strand at 4267.435 kb on - strand at 4267.503 kb on + strand, within Rru_A3717 at 4267.503 kb on + strand, within Rru_A3717 at 4267.503 kb on + strand, within Rru_A3717 at 4267.504 kb on - strand, within Rru_A3717
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic Acid (C) and N2; anaerobic; high light remove 4,263,537 + Rru_A3713 0.46 -0.5 4,263,537 + Rru_A3713 0.46 -0.3 4,263,538 - Rru_A3713 0.46 -0.2 4,263,538 - Rru_A3713 0.46 +0.2 4,263,538 - Rru_A3713 0.46 -0.3 4,263,538 - Rru_A3713 0.46 +0.5 4,263,573 + Rru_A3713 0.52 +0.3 4,263,574 - Rru_A3713 0.52 +0.4 4,263,574 - Rru_A3713 0.52 +0.4 4,263,574 - Rru_A3713 0.52 -0.4 4,263,574 - Rru_A3713 0.52 -1.1 4,263,578 + Rru_A3713 0.52 -0.4 4,263,578 + Rru_A3713 0.52 -0.8 4,263,579 - Rru_A3713 0.52 +0.3 4,263,579 - Rru_A3713 0.52 -1.7 4,264,195 + Rru_A3714 0.34 -0.5 4,264,618 - -1.1 4,264,677 - -0.1 4,264,905 - Rru_A3715 0.18 -0.7 4,265,182 + Rru_A3715 0.31 -0.5 4,265,182 + Rru_A3715 0.31 -1.3 4,265,182 + Rru_A3715 0.31 -0.5 4,265,182 + Rru_A3715 0.31 +1.4 4,265,182 + Rru_A3715 0.31 +0.5 4,265,183 - Rru_A3715 0.31 +0.1 4,265,183 - Rru_A3715 0.31 -0.3 4,265,183 - Rru_A3715 0.31 -0.0 4,265,183 - Rru_A3715 0.31 +0.5 4,265,516 + Rru_A3715 0.47 +0.3 4,265,516 + Rru_A3715 0.47 +0.0 4,265,516 + Rru_A3715 0.47 +0.5 4,265,516 + Rru_A3715 0.47 +0.0 4,265,517 - Rru_A3715 0.47 +0.1 4,265,517 - Rru_A3715 0.47 +0.5 4,265,517 - Rru_A3715 0.47 +0.8 4,265,517 - Rru_A3715 0.47 +0.1 4,265,517 - Rru_A3715 0.47 -0.1 4,265,517 - Rru_A3715 0.47 -1.7 4,265,570 + Rru_A3715 0.49 -0.9 4,265,570 + Rru_A3715 0.49 -0.3 4,265,570 + Rru_A3715 0.49 -0.2 4,265,571 - Rru_A3715 0.49 +0.5 4,265,571 - Rru_A3715 0.49 +0.7 4,265,571 - Rru_A3715 0.49 -0.1 4,265,726 + Rru_A3715 0.56 -0.6 4,265,726 + Rru_A3715 0.56 +0.1 4,265,735 + Rru_A3715 0.57 -0.7 4,265,735 + Rru_A3715 0.57 +0.2 4,265,820 - Rru_A3715 0.61 -0.9 4,265,820 - Rru_A3715 0.61 +0.1 4,265,839 + Rru_A3715 0.62 +0.5 4,265,839 + Rru_A3715 0.62 -0.2 4,265,840 - Rru_A3715 0.62 -0.1 4,265,840 - Rru_A3715 0.62 -0.6 4,265,840 - Rru_A3715 0.62 -0.7 4,265,840 - Rru_A3715 0.62 -0.5 4,265,918 + Rru_A3715 0.65 +0.5 4,265,918 + Rru_A3715 0.65 +0.0 4,265,918 + Rru_A3715 0.65 +0.2 4,265,919 - Rru_A3715 0.65 +0.4 4,265,919 - Rru_A3715 0.65 +0.5 4,266,041 + Rru_A3715 0.71 +0.5 4,266,041 + Rru_A3715 0.71 +0.5 4,266,041 + Rru_A3715 0.71 -0.6 4,266,041 + Rru_A3715 0.71 +0.0 4,266,042 - Rru_A3715 0.71 -0.9 4,266,042 - Rru_A3715 0.71 +0.2 4,266,042 - Rru_A3715 0.71 +0.5 4,266,042 - Rru_A3715 0.71 +0.4 4,266,042 - Rru_A3715 0.71 -0.3 4,266,042 - Rru_A3715 0.71 -0.1 4,266,431 + Rru_A3715 0.89 +0.8 4,266,431 + Rru_A3715 0.89 -0.1 4,266,431 + Rru_A3715 0.89 -0.0 4,266,431 + Rru_A3715 0.89 +0.2 4,266,432 - Rru_A3715 0.89 +0.5 4,266,432 - Rru_A3715 0.89 -0.2 4,266,432 - Rru_A3715 0.89 +1.1 4,266,432 - Rru_A3715 0.89 +0.6 4,266,488 + -1.2 4,266,623 + -2.2 4,266,624 - +0.5 4,266,624 - -0.3 4,266,626 + -0.2 4,266,626 + +0.5 4,266,626 + -0.6 4,266,627 - -0.0 4,266,627 - +0.4 4,266,627 - +0.3 4,266,627 - -0.1 4,266,627 - +0.3 4,266,627 - -1.4 4,266,627 - +0.0 4,266,627 - +0.9 4,266,800 - Rru_A3716 0.21 +0.0 4,266,800 - Rru_A3716 0.21 -0.2 4,266,836 - Rru_A3716 0.26 +0.9 4,267,164 + Rru_A3716 0.71 +0.1 4,267,322 - +0.6 4,267,360 + -0.5 4,267,361 - +2.2 4,267,361 - +0.2 4,267,361 - -0.8 4,267,361 - -0.3 4,267,362 + +0.1 4,267,362 + +0.0 4,267,362 + -0.7 4,267,362 + +0.7 4,267,363 - -0.5 4,267,419 + +1.4 4,267,419 + -0.1 4,267,420 - -0.3 4,267,435 - +0.0 4,267,503 + Rru_A3717 0.17 -0.1 4,267,503 + Rru_A3717 0.17 +0.7 4,267,503 + Rru_A3717 0.17 -0.1 4,267,504 - Rru_A3717 0.17 -0.1
Or see this region's nucleotide sequence