Strain Fitness in Rhodospirillum rubrum S1H around Rru_A2881

Experiment: L-Malic Acid (C) and N2; anaerobic; high light

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A2880 and Rru_A2881 overlap by 4 nucleotidesRru_A2881 and Rru_AR0053 are separated by 90 nucleotidesRru_AR0053 and Rru_A2882 are separated by 60 nucleotides Rru_A2880: Rru_A2880 - hypothetical protein (NCBI), at 3,318,121 to 3,320,748 _A2880 Rru_A2881: Rru_A2881 - virulence protein (NCBI), at 3,320,745 to 3,322,115 _A2881 Rru_AR0053: Rru_AR0053 - tRNA-Met (NCBI), at 3,322,206 to 3,322,281 _AR0053 Rru_A2882: Rru_A2882 - Sigma 70 (RpoD) (NCBI), at 3,322,342 to 3,324,432 _A2882 Position (kb) 3320 3321 3322 3323Strain fitness (log2 ratio) -2 -1 0 1at 3319.882 kb on + strand, within Rru_A2880at 3319.882 kb on + strand, within Rru_A2880at 3319.882 kb on + strand, within Rru_A2880at 3319.883 kb on - strand, within Rru_A2880at 3319.883 kb on - strand, within Rru_A2880at 3319.883 kb on - strand, within Rru_A2880at 3319.883 kb on - strand, within Rru_A2880at 3319.883 kb on - strand, within Rru_A2880at 3320.035 kb on + strand, within Rru_A2880at 3320.035 kb on + strand, within Rru_A2880at 3320.035 kb on + strand, within Rru_A2880at 3320.035 kb on + strand, within Rru_A2880at 3320.036 kb on - strand, within Rru_A2880at 3320.122 kb on + strand, within Rru_A2880at 3320.180 kb on + strand, within Rru_A2880at 3320.181 kb on - strand, within Rru_A2880at 3320.296 kb on + strand, within Rru_A2880at 3320.296 kb on + strand, within Rru_A2880at 3320.296 kb on + strand, within Rru_A2880at 3320.296 kb on + strand, within Rru_A2880at 3320.296 kb on + strand, within Rru_A2880at 3320.296 kb on + strand, within Rru_A2880at 3320.297 kb on - strand, within Rru_A2880at 3320.297 kb on - strand, within Rru_A2880at 3320.297 kb on - strand, within Rru_A2880at 3320.297 kb on - strand, within Rru_A2880at 3320.297 kb on - strand, within Rru_A2880at 3320.297 kb on - strand, within Rru_A2880at 3320.482 kb on + strand, within Rru_A2880at 3320.483 kb on - strand, within Rru_A2880at 3320.759 kb on + strandat 3320.760 kb on - strandat 3320.816 kb on + strandat 3320.817 kb on - strandat 3320.817 kb on - strandat 3320.994 kb on + strand, within Rru_A2881at 3320.995 kb on - strand, within Rru_A2881at 3321.033 kb on + strand, within Rru_A2881at 3321.033 kb on + strand, within Rru_A2881at 3321.033 kb on + strand, within Rru_A2881at 3321.034 kb on - strand, within Rru_A2881at 3321.034 kb on - strand, within Rru_A2881at 3321.096 kb on + strand, within Rru_A2881at 3321.096 kb on + strand, within Rru_A2881at 3321.096 kb on + strand, within Rru_A2881at 3321.096 kb on + strand, within Rru_A2881at 3321.276 kb on + strand, within Rru_A2881at 3321.689 kb on + strand, within Rru_A2881at 3321.689 kb on + strand, within Rru_A2881at 3321.689 kb on + strand, within Rru_A2881at 3321.689 kb on + strand, within Rru_A2881at 3321.689 kb on + strand, within Rru_A2881at 3321.690 kb on - strand, within Rru_A2881at 3321.690 kb on - strand, within Rru_A2881at 3321.690 kb on - strand, within Rru_A2881at 3321.690 kb on - strand, within Rru_A2881at 3321.693 kb on + strand, within Rru_A2881at 3321.693 kb on + strand, within Rru_A2881at 3321.694 kb on - strand, within Rru_A2881at 3321.946 kb on - strand, within Rru_A2881at 3321.946 kb on - strand, within Rru_A2881at 3321.946 kb on - strand, within Rru_A2881at 3322.041 kb on + strandat 3322.041 kb on + strandat 3322.041 kb on + strandat 3322.041 kb on + strandat 3322.042 kb on - strandat 3322.042 kb on - strandat 3322.114 kb on - strandat 3322.114 kb on - strandat 3322.114 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic Acid (C) and N2; anaerobic; high light
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3,319,882 + Rru_A2880 0.67 -0.2
3,319,882 + Rru_A2880 0.67 -0.7
3,319,882 + Rru_A2880 0.67 +0.1
3,319,883 - Rru_A2880 0.67 -0.3
3,319,883 - Rru_A2880 0.67 +0.1
3,319,883 - Rru_A2880 0.67 +0.0
3,319,883 - Rru_A2880 0.67 +0.0
3,319,883 - Rru_A2880 0.67 -0.3
3,320,035 + Rru_A2880 0.73 +0.0
3,320,035 + Rru_A2880 0.73 -1.6
3,320,035 + Rru_A2880 0.73 -0.5
3,320,035 + Rru_A2880 0.73 -0.2
3,320,036 - Rru_A2880 0.73 -1.4
3,320,122 + Rru_A2880 0.76 +0.1
3,320,180 + Rru_A2880 0.78 -1.2
3,320,181 - Rru_A2880 0.78 -0.9
3,320,296 + Rru_A2880 0.83 -0.8
3,320,296 + Rru_A2880 0.83 +0.5
3,320,296 + Rru_A2880 0.83 -1.9
3,320,296 + Rru_A2880 0.83 -0.2
3,320,296 + Rru_A2880 0.83 +0.5
3,320,296 + Rru_A2880 0.83 +0.6
3,320,297 - Rru_A2880 0.83 +0.2
3,320,297 - Rru_A2880 0.83 +0.5
3,320,297 - Rru_A2880 0.83 -0.7
3,320,297 - Rru_A2880 0.83 -0.5
3,320,297 - Rru_A2880 0.83 +0.3
3,320,297 - Rru_A2880 0.83 -0.1
3,320,482 + Rru_A2880 0.90 +0.3
3,320,483 - Rru_A2880 0.90 -0.4
3,320,759 + -0.2
3,320,760 - +0.3
3,320,816 + -0.8
3,320,817 - +0.2
3,320,817 - -0.0
3,320,994 + Rru_A2881 0.18 -0.3
3,320,995 - Rru_A2881 0.18 +1.1
3,321,033 + Rru_A2881 0.21 -0.4
3,321,033 + Rru_A2881 0.21 +0.2
3,321,033 + Rru_A2881 0.21 +0.0
3,321,034 - Rru_A2881 0.21 +0.5
3,321,034 - Rru_A2881 0.21 -0.3
3,321,096 + Rru_A2881 0.26 -1.0
3,321,096 + Rru_A2881 0.26 -0.4
3,321,096 + Rru_A2881 0.26 -0.5
3,321,096 + Rru_A2881 0.26 -1.4
3,321,276 + Rru_A2881 0.39 -0.3
3,321,689 + Rru_A2881 0.69 -0.2
3,321,689 + Rru_A2881 0.69 +0.3
3,321,689 + Rru_A2881 0.69 +0.5
3,321,689 + Rru_A2881 0.69 +0.2
3,321,689 + Rru_A2881 0.69 -0.4
3,321,690 - Rru_A2881 0.69 +0.5
3,321,690 - Rru_A2881 0.69 +1.4
3,321,690 - Rru_A2881 0.69 +0.5
3,321,690 - Rru_A2881 0.69 -0.1
3,321,693 + Rru_A2881 0.69 +0.2
3,321,693 + Rru_A2881 0.69 +0.6
3,321,694 - Rru_A2881 0.69 -0.6
3,321,946 - Rru_A2881 0.88 -0.3
3,321,946 - Rru_A2881 0.88 +0.5
3,321,946 - Rru_A2881 0.88 +0.2
3,322,041 + -0.8
3,322,041 + +1.6
3,322,041 + -0.3
3,322,041 + -0.4
3,322,042 - +0.0
3,322,042 - +1.0
3,322,114 - -0.1
3,322,114 - -0.6
3,322,114 - +0.5

Or see this region's nucleotide sequence