Experiment: L-Malic Acid (C) and N2; anaerobic; high light
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A2880 and Rru_A2881 overlap by 4 nucleotides Rru_A2881 and Rru_AR0053 are separated by 90 nucleotides Rru_AR0053 and Rru_A2882 are separated by 60 nucleotides
Rru_A2880: Rru_A2880 - hypothetical protein (NCBI), at 3,318,121 to 3,320,748
_A2880
Rru_A2881: Rru_A2881 - virulence protein (NCBI), at 3,320,745 to 3,322,115
_A2881
Rru_AR0053: Rru_AR0053 - tRNA-Met (NCBI), at 3,322,206 to 3,322,281
_AR0053
Rru_A2882: Rru_A2882 - Sigma 70 (RpoD) (NCBI), at 3,322,342 to 3,324,432
_A2882
Position (kb)
3320
3321
3322
3323 Strain fitness (log2 ratio)
-2
-1
0
1 at 3319.882 kb on + strand, within Rru_A2880 at 3319.882 kb on + strand, within Rru_A2880 at 3319.882 kb on + strand, within Rru_A2880 at 3319.883 kb on - strand, within Rru_A2880 at 3319.883 kb on - strand, within Rru_A2880 at 3319.883 kb on - strand, within Rru_A2880 at 3319.883 kb on - strand, within Rru_A2880 at 3319.883 kb on - strand, within Rru_A2880 at 3320.035 kb on + strand, within Rru_A2880 at 3320.035 kb on + strand, within Rru_A2880 at 3320.035 kb on + strand, within Rru_A2880 at 3320.035 kb on + strand, within Rru_A2880 at 3320.036 kb on - strand, within Rru_A2880 at 3320.122 kb on + strand, within Rru_A2880 at 3320.180 kb on + strand, within Rru_A2880 at 3320.181 kb on - strand, within Rru_A2880 at 3320.296 kb on + strand, within Rru_A2880 at 3320.296 kb on + strand, within Rru_A2880 at 3320.296 kb on + strand, within Rru_A2880 at 3320.296 kb on + strand, within Rru_A2880 at 3320.296 kb on + strand, within Rru_A2880 at 3320.296 kb on + strand, within Rru_A2880 at 3320.297 kb on - strand, within Rru_A2880 at 3320.297 kb on - strand, within Rru_A2880 at 3320.297 kb on - strand, within Rru_A2880 at 3320.297 kb on - strand, within Rru_A2880 at 3320.297 kb on - strand, within Rru_A2880 at 3320.297 kb on - strand, within Rru_A2880 at 3320.482 kb on + strand, within Rru_A2880 at 3320.483 kb on - strand, within Rru_A2880 at 3320.759 kb on + strand at 3320.760 kb on - strand at 3320.816 kb on + strand at 3320.817 kb on - strand at 3320.817 kb on - strand at 3320.994 kb on + strand, within Rru_A2881 at 3320.995 kb on - strand, within Rru_A2881 at 3321.033 kb on + strand, within Rru_A2881 at 3321.033 kb on + strand, within Rru_A2881 at 3321.033 kb on + strand, within Rru_A2881 at 3321.034 kb on - strand, within Rru_A2881 at 3321.034 kb on - strand, within Rru_A2881 at 3321.096 kb on + strand, within Rru_A2881 at 3321.096 kb on + strand, within Rru_A2881 at 3321.096 kb on + strand, within Rru_A2881 at 3321.096 kb on + strand, within Rru_A2881 at 3321.276 kb on + strand, within Rru_A2881 at 3321.689 kb on + strand, within Rru_A2881 at 3321.689 kb on + strand, within Rru_A2881 at 3321.689 kb on + strand, within Rru_A2881 at 3321.689 kb on + strand, within Rru_A2881 at 3321.689 kb on + strand, within Rru_A2881 at 3321.690 kb on - strand, within Rru_A2881 at 3321.690 kb on - strand, within Rru_A2881 at 3321.690 kb on - strand, within Rru_A2881 at 3321.690 kb on - strand, within Rru_A2881 at 3321.693 kb on + strand, within Rru_A2881 at 3321.693 kb on + strand, within Rru_A2881 at 3321.694 kb on - strand, within Rru_A2881 at 3321.946 kb on - strand, within Rru_A2881 at 3321.946 kb on - strand, within Rru_A2881 at 3321.946 kb on - strand, within Rru_A2881 at 3322.041 kb on + strand at 3322.041 kb on + strand at 3322.041 kb on + strand at 3322.041 kb on + strand at 3322.042 kb on - strand at 3322.042 kb on - strand at 3322.114 kb on - strand at 3322.114 kb on - strand at 3322.114 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic Acid (C) and N2; anaerobic; high light remove 3,319,882 + Rru_A2880 0.67 -0.2 3,319,882 + Rru_A2880 0.67 -0.7 3,319,882 + Rru_A2880 0.67 +0.1 3,319,883 - Rru_A2880 0.67 -0.3 3,319,883 - Rru_A2880 0.67 +0.1 3,319,883 - Rru_A2880 0.67 +0.0 3,319,883 - Rru_A2880 0.67 +0.0 3,319,883 - Rru_A2880 0.67 -0.3 3,320,035 + Rru_A2880 0.73 +0.0 3,320,035 + Rru_A2880 0.73 -1.6 3,320,035 + Rru_A2880 0.73 -0.5 3,320,035 + Rru_A2880 0.73 -0.2 3,320,036 - Rru_A2880 0.73 -1.4 3,320,122 + Rru_A2880 0.76 +0.1 3,320,180 + Rru_A2880 0.78 -1.2 3,320,181 - Rru_A2880 0.78 -0.9 3,320,296 + Rru_A2880 0.83 -0.8 3,320,296 + Rru_A2880 0.83 +0.5 3,320,296 + Rru_A2880 0.83 -1.9 3,320,296 + Rru_A2880 0.83 -0.2 3,320,296 + Rru_A2880 0.83 +0.5 3,320,296 + Rru_A2880 0.83 +0.6 3,320,297 - Rru_A2880 0.83 +0.2 3,320,297 - Rru_A2880 0.83 +0.5 3,320,297 - Rru_A2880 0.83 -0.7 3,320,297 - Rru_A2880 0.83 -0.5 3,320,297 - Rru_A2880 0.83 +0.3 3,320,297 - Rru_A2880 0.83 -0.1 3,320,482 + Rru_A2880 0.90 +0.3 3,320,483 - Rru_A2880 0.90 -0.4 3,320,759 + -0.2 3,320,760 - +0.3 3,320,816 + -0.8 3,320,817 - +0.2 3,320,817 - -0.0 3,320,994 + Rru_A2881 0.18 -0.3 3,320,995 - Rru_A2881 0.18 +1.1 3,321,033 + Rru_A2881 0.21 -0.4 3,321,033 + Rru_A2881 0.21 +0.2 3,321,033 + Rru_A2881 0.21 +0.0 3,321,034 - Rru_A2881 0.21 +0.5 3,321,034 - Rru_A2881 0.21 -0.3 3,321,096 + Rru_A2881 0.26 -1.0 3,321,096 + Rru_A2881 0.26 -0.4 3,321,096 + Rru_A2881 0.26 -0.5 3,321,096 + Rru_A2881 0.26 -1.4 3,321,276 + Rru_A2881 0.39 -0.3 3,321,689 + Rru_A2881 0.69 -0.2 3,321,689 + Rru_A2881 0.69 +0.3 3,321,689 + Rru_A2881 0.69 +0.5 3,321,689 + Rru_A2881 0.69 +0.2 3,321,689 + Rru_A2881 0.69 -0.4 3,321,690 - Rru_A2881 0.69 +0.5 3,321,690 - Rru_A2881 0.69 +1.4 3,321,690 - Rru_A2881 0.69 +0.5 3,321,690 - Rru_A2881 0.69 -0.1 3,321,693 + Rru_A2881 0.69 +0.2 3,321,693 + Rru_A2881 0.69 +0.6 3,321,694 - Rru_A2881 0.69 -0.6 3,321,946 - Rru_A2881 0.88 -0.3 3,321,946 - Rru_A2881 0.88 +0.5 3,321,946 - Rru_A2881 0.88 +0.2 3,322,041 + -0.8 3,322,041 + +1.6 3,322,041 + -0.3 3,322,041 + -0.4 3,322,042 - +0.0 3,322,042 - +1.0 3,322,114 - -0.1 3,322,114 - -0.6 3,322,114 - +0.5
Or see this region's nucleotide sequence