Strain Fitness in Rhodospirillum rubrum S1H around Rru_A1674

Experiment: L-Malic Acid (C) and N2; anaerobic; high light

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A1671 and Rru_A1672 overlap by 20 nucleotidesRru_A1672 and Rru_A1673 are separated by 44 nucleotidesRru_A1673 and Rru_A1674 are separated by 24 nucleotidesRru_A1674 and Rru_A1675 are separated by 44 nucleotides Rru_A1671: Rru_A1671 - hypothetical protein (NCBI), at 1,961,364 to 1,962,509 _A1671 Rru_A1672: Rru_A1672 - hypothetical protein (NCBI), at 1,962,490 to 1,962,810 _A1672 Rru_A1673: Rru_A1673 - CutA1 divalent ion tolerance protein (NCBI), at 1,962,855 to 1,963,220 _A1673 Rru_A1674: Rru_A1674 - bifunctional enzyme, 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, 4-diphosphocytidyl-2C- methyl-D-erythritol synthase (NCBI), at 1,963,245 to 1,964,399 _A1674 Rru_A1675: Rru_A1675 - Cytochrome c assembly protein (NCBI), at 1,964,444 to 1,965,322 _A1675 Position (kb) 1963 1964 1965Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1 2at 1962.252 kb on + strand, within Rru_A1671at 1962.252 kb on + strand, within Rru_A1671at 1962.252 kb on + strand, within Rru_A1671at 1962.252 kb on + strand, within Rru_A1671at 1962.252 kb on + strand, within Rru_A1671at 1962.253 kb on - strand, within Rru_A1671at 1962.253 kb on - strand, within Rru_A1671at 1962.253 kb on - strand, within Rru_A1671at 1962.253 kb on - strand, within Rru_A1671at 1962.253 kb on - strand, within Rru_A1671at 1962.253 kb on - strand, within Rru_A1671at 1962.253 kb on - strand, within Rru_A1671at 1962.253 kb on - strand, within Rru_A1671at 1962.918 kb on + strand, within Rru_A1673at 1962.918 kb on + strand, within Rru_A1673at 1962.918 kb on + strand, within Rru_A1673at 1962.918 kb on + strand, within Rru_A1673at 1962.918 kb on + strand, within Rru_A1673at 1962.918 kb on + strand, within Rru_A1673at 1962.918 kb on + strand, within Rru_A1673at 1962.918 kb on + strand, within Rru_A1673at 1962.919 kb on - strand, within Rru_A1673at 1962.919 kb on - strand, within Rru_A1673at 1962.921 kb on - strand, within Rru_A1673at 1962.921 kb on - strand, within Rru_A1673at 1963.023 kb on + strand, within Rru_A1673at 1963.023 kb on + strand, within Rru_A1673at 1963.023 kb on + strand, within Rru_A1673at 1963.024 kb on - strand, within Rru_A1673at 1963.024 kb on - strand, within Rru_A1673at 1963.024 kb on - strand, within Rru_A1673at 1963.131 kb on + strand, within Rru_A1673at 1963.131 kb on + strand, within Rru_A1673at 1963.132 kb on - strand, within Rru_A1673at 1963.132 kb on - strand, within Rru_A1673at 1963.132 kb on - strand, within Rru_A1673at 1963.138 kb on + strand, within Rru_A1673at 1963.139 kb on - strand, within Rru_A1673at 1964.417 kb on - strandat 1964.420 kb on + strandat 1964.421 kb on - strandat 1964.421 kb on - strandat 1964.421 kb on - strandat 1964.421 kb on - strandat 1964.506 kb on + strandat 1964.506 kb on + strandat 1964.506 kb on + strandat 1964.507 kb on - strandat 1964.507 kb on - strandat 1964.508 kb on + strandat 1964.508 kb on + strandat 1964.509 kb on - strandat 1964.509 kb on - strandat 1964.509 kb on - strandat 1964.509 kb on - strandat 1964.509 kb on - strandat 1964.509 kb on - strandat 1964.542 kb on + strand, within Rru_A1675at 1964.542 kb on + strand, within Rru_A1675at 1964.542 kb on + strand, within Rru_A1675at 1964.613 kb on + strand, within Rru_A1675at 1964.614 kb on - strand, within Rru_A1675at 1964.614 kb on - strand, within Rru_A1675at 1964.757 kb on + strand, within Rru_A1675at 1964.757 kb on + strand, within Rru_A1675at 1964.757 kb on + strand, within Rru_A1675at 1964.757 kb on + strand, within Rru_A1675at 1964.757 kb on + strand, within Rru_A1675at 1964.757 kb on + strand, within Rru_A1675at 1964.757 kb on + strand, within Rru_A1675at 1964.757 kb on + strand, within Rru_A1675at 1964.807 kb on + strand, within Rru_A1675at 1964.924 kb on + strand, within Rru_A1675at 1964.924 kb on + strand, within Rru_A1675at 1964.924 kb on + strand, within Rru_A1675at 1964.924 kb on + strand, within Rru_A1675at 1964.924 kb on + strand, within Rru_A1675at 1964.924 kb on + strand, within Rru_A1675at 1964.925 kb on - strand, within Rru_A1675at 1965.065 kb on + strand, within Rru_A1675at 1965.065 kb on + strand, within Rru_A1675at 1965.066 kb on - strand, within Rru_A1675at 1965.066 kb on - strand, within Rru_A1675at 1965.066 kb on - strand, within Rru_A1675at 1965.066 kb on - strand, within Rru_A1675at 1965.067 kb on + strand, within Rru_A1675at 1965.067 kb on + strand, within Rru_A1675at 1965.263 kb on + strandat 1965.264 kb on - strandat 1965.264 kb on - strandat 1965.264 kb on - strandat 1965.264 kb on - strandat 1965.388 kb on + strandat 1965.391 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic Acid (C) and N2; anaerobic; high light
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1,962,252 + Rru_A1671 0.77 -0.7
1,962,252 + Rru_A1671 0.77 +0.4
1,962,252 + Rru_A1671 0.77 -0.8
1,962,252 + Rru_A1671 0.77 +0.2
1,962,252 + Rru_A1671 0.77 +1.9
1,962,253 - Rru_A1671 0.78 -0.1
1,962,253 - Rru_A1671 0.78 +0.2
1,962,253 - Rru_A1671 0.78 +0.0
1,962,253 - Rru_A1671 0.78 -0.1
1,962,253 - Rru_A1671 0.78 +0.6
1,962,253 - Rru_A1671 0.78 -0.6
1,962,253 - Rru_A1671 0.78 -0.6
1,962,253 - Rru_A1671 0.78 -0.0
1,962,918 + Rru_A1673 0.17 +0.1
1,962,918 + Rru_A1673 0.17 -1.9
1,962,918 + Rru_A1673 0.17 -1.1
1,962,918 + Rru_A1673 0.17 -0.1
1,962,918 + Rru_A1673 0.17 +0.1
1,962,918 + Rru_A1673 0.17 -0.3
1,962,918 + Rru_A1673 0.17 -0.9
1,962,918 + Rru_A1673 0.17 -0.5
1,962,919 - Rru_A1673 0.17 -1.3
1,962,919 - Rru_A1673 0.17 -0.1
1,962,921 - Rru_A1673 0.18 -2.3
1,962,921 - Rru_A1673 0.18 -0.4
1,963,023 + Rru_A1673 0.46 +0.6
1,963,023 + Rru_A1673 0.46 -0.6
1,963,023 + Rru_A1673 0.46 +0.4
1,963,024 - Rru_A1673 0.46 -0.7
1,963,024 - Rru_A1673 0.46 +0.4
1,963,024 - Rru_A1673 0.46 -0.5
1,963,131 + Rru_A1673 0.75 -1.0
1,963,131 + Rru_A1673 0.75 +0.4
1,963,132 - Rru_A1673 0.76 -0.9
1,963,132 - Rru_A1673 0.76 -1.2
1,963,132 - Rru_A1673 0.76 -0.5
1,963,138 + Rru_A1673 0.77 +0.0
1,963,139 - Rru_A1673 0.78 -0.7
1,964,417 - -0.4
1,964,420 + +0.4
1,964,421 - -0.2
1,964,421 - +0.1
1,964,421 - +0.4
1,964,421 - -0.7
1,964,506 + -3.3
1,964,506 + -2.6
1,964,506 + -0.4
1,964,507 - -4.0
1,964,507 - -3.1
1,964,508 + -0.6
1,964,508 + +0.3
1,964,509 - -3.2
1,964,509 - +0.4
1,964,509 - -0.9
1,964,509 - -0.9
1,964,509 - +0.4
1,964,509 - -4.1
1,964,542 + Rru_A1675 0.11 -3.1
1,964,542 + Rru_A1675 0.11 +0.4
1,964,542 + Rru_A1675 0.11 -3.8
1,964,613 + Rru_A1675 0.19 -4.2
1,964,614 - Rru_A1675 0.19 -4.6
1,964,614 - Rru_A1675 0.19 -4.3
1,964,757 + Rru_A1675 0.36 -4.8
1,964,757 + Rru_A1675 0.36 -4.1
1,964,757 + Rru_A1675 0.36 -3.0
1,964,757 + Rru_A1675 0.36 -3.4
1,964,757 + Rru_A1675 0.36 -2.5
1,964,757 + Rru_A1675 0.36 -4.4
1,964,757 + Rru_A1675 0.36 -3.5
1,964,757 + Rru_A1675 0.36 -4.3
1,964,807 + Rru_A1675 0.41 -3.6
1,964,924 + Rru_A1675 0.55 -4.2
1,964,924 + Rru_A1675 0.55 -3.8
1,964,924 + Rru_A1675 0.55 -3.5
1,964,924 + Rru_A1675 0.55 -6.1
1,964,924 + Rru_A1675 0.55 -4.2
1,964,924 + Rru_A1675 0.55 -5.2
1,964,925 - Rru_A1675 0.55 +0.4
1,965,065 + Rru_A1675 0.71 -4.3
1,965,065 + Rru_A1675 0.71 -4.3
1,965,066 - Rru_A1675 0.71 -4.3
1,965,066 - Rru_A1675 0.71 -3.2
1,965,066 - Rru_A1675 0.71 -2.9
1,965,066 - Rru_A1675 0.71 -3.1
1,965,067 + Rru_A1675 0.71 -3.6
1,965,067 + Rru_A1675 0.71 -4.3
1,965,263 + -5.3
1,965,264 - -3.9
1,965,264 - -4.8
1,965,264 - +0.4
1,965,264 - -4.4
1,965,388 + +0.4
1,965,391 + +1.1

Or see this region's nucleotide sequence