Strain Fitness in Rhodospirillum rubrum S1H around Rru_A1611

Experiment: L-Malic Acid (C) and N2; anaerobic; high light

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A1609 and Rru_A1610 are separated by 86 nucleotidesRru_A1610 and Rru_A1611 are separated by 89 nucleotidesRru_A1611 and Rru_A1612 overlap by 4 nucleotidesRru_A1612 and Rru_A1613 overlap by 4 nucleotides Rru_A1609: Rru_A1609 - hypothetical protein (NCBI), at 1,903,783 to 1,904,085 _A1609 Rru_A1610: Rru_A1610 - hypothetical protein (NCBI), at 1,904,172 to 1,904,954 _A1610 Rru_A1611: Rru_A1611 - Cobalamin synthesis protein/P47K (NCBI), at 1,905,044 to 1,906,144 _A1611 Rru_A1612: Rru_A1612 - Phosphoribosyl-AMP cyclohydrolase (NCBI), at 1,906,141 to 1,906,572 _A1612 Rru_A1613: Rru_A1613 - Cystathionine beta-lyase (NCBI), at 1,906,569 to 1,907,747 _A1613 Position (kb) 1905 1906 1907Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 1904.083 kb on + strandat 1904.083 kb on + strandat 1904.083 kb on + strandat 1904.376 kb on - strand, within Rru_A1610at 1904.796 kb on + strand, within Rru_A1610at 1904.796 kb on + strand, within Rru_A1610at 1904.797 kb on - strand, within Rru_A1610at 1904.998 kb on - strandat 1904.998 kb on - strandat 1905.053 kb on + strandat 1905.053 kb on + strandat 1905.054 kb on - strandat 1905.715 kb on + strand, within Rru_A1611at 1905.716 kb on - strand, within Rru_A1611at 1906.081 kb on + strandat 1906.082 kb on - strandat 1906.082 kb on - strandat 1906.127 kb on + strandat 1906.170 kb on - strandat 1906.261 kb on - strand, within Rru_A1612at 1906.534 kb on + strandat 1906.535 kb on - strandat 1906.535 kb on - strandat 1906.535 kb on - strandat 1906.653 kb on - strandat 1906.739 kb on - strand, within Rru_A1613at 1906.739 kb on - strand, within Rru_A1613at 1906.739 kb on - strand, within Rru_A1613at 1906.753 kb on + strand, within Rru_A1613at 1906.753 kb on + strand, within Rru_A1613at 1906.754 kb on - strand, within Rru_A1613at 1906.754 kb on - strand, within Rru_A1613at 1906.775 kb on + strand, within Rru_A1613at 1906.775 kb on + strand, within Rru_A1613at 1906.775 kb on + strand, within Rru_A1613at 1906.776 kb on - strand, within Rru_A1613at 1906.776 kb on - strand, within Rru_A1613at 1906.776 kb on - strand, within Rru_A1613at 1906.776 kb on - strand, within Rru_A1613at 1906.776 kb on - strand, within Rru_A1613at 1906.776 kb on - strand, within Rru_A1613at 1906.776 kb on - strand, within Rru_A1613at 1906.787 kb on + strand, within Rru_A1613at 1906.787 kb on + strand, within Rru_A1613at 1906.788 kb on - strand, within Rru_A1613at 1906.788 kb on - strand, within Rru_A1613at 1906.788 kb on - strand, within Rru_A1613at 1906.788 kb on - strand, within Rru_A1613at 1906.901 kb on - strand, within Rru_A1613at 1907.132 kb on + strand, within Rru_A1613at 1907.133 kb on - strand, within Rru_A1613at 1907.133 kb on - strand, within Rru_A1613at 1907.134 kb on + strand, within Rru_A1613at 1907.134 kb on + strand, within Rru_A1613at 1907.135 kb on - strand, within Rru_A1613

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic Acid (C) and N2; anaerobic; high light
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1,904,083 + -0.9
1,904,083 + +0.4
1,904,083 + +0.0
1,904,376 - Rru_A1610 0.26 -0.7
1,904,796 + Rru_A1610 0.80 -0.4
1,904,796 + Rru_A1610 0.80 +0.2
1,904,797 - Rru_A1610 0.80 +0.3
1,904,998 - +0.1
1,904,998 - +0.2
1,905,053 + +0.2
1,905,053 + -0.1
1,905,054 - +0.4
1,905,715 + Rru_A1611 0.61 -1.9
1,905,716 - Rru_A1611 0.61 -0.5
1,906,081 + +0.6
1,906,082 - +0.1
1,906,082 - +0.4
1,906,127 + +0.5
1,906,170 - -1.4
1,906,261 - Rru_A1612 0.28 +0.4
1,906,534 + -1.2
1,906,535 - -2.1
1,906,535 - -0.6
1,906,535 - -4.4
1,906,653 - -0.1
1,906,739 - Rru_A1613 0.14 +0.6
1,906,739 - Rru_A1613 0.14 -0.2
1,906,739 - Rru_A1613 0.14 -0.8
1,906,753 + Rru_A1613 0.16 +0.4
1,906,753 + Rru_A1613 0.16 -3.3
1,906,754 - Rru_A1613 0.16 -0.4
1,906,754 - Rru_A1613 0.16 -1.6
1,906,775 + Rru_A1613 0.17 -2.9
1,906,775 + Rru_A1613 0.17 -3.6
1,906,775 + Rru_A1613 0.17 -4.2
1,906,776 - Rru_A1613 0.18 -0.5
1,906,776 - Rru_A1613 0.18 -2.0
1,906,776 - Rru_A1613 0.18 -0.1
1,906,776 - Rru_A1613 0.18 -0.7
1,906,776 - Rru_A1613 0.18 +0.7
1,906,776 - Rru_A1613 0.18 -0.8
1,906,776 - Rru_A1613 0.18 +0.5
1,906,787 + Rru_A1613 0.18 -4.4
1,906,787 + Rru_A1613 0.18 -2.1
1,906,788 - Rru_A1613 0.19 +0.4
1,906,788 - Rru_A1613 0.19 +0.3
1,906,788 - Rru_A1613 0.19 -0.1
1,906,788 - Rru_A1613 0.19 +0.4
1,906,901 - Rru_A1613 0.28 +0.6
1,907,132 + Rru_A1613 0.48 -5.1
1,907,133 - Rru_A1613 0.48 -0.7
1,907,133 - Rru_A1613 0.48 +0.1
1,907,134 + Rru_A1613 0.48 -4.2
1,907,134 + Rru_A1613 0.48 -3.1
1,907,135 - Rru_A1613 0.48 -0.2

Or see this region's nucleotide sequence