Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0752

Experiment: L-Malic Acid (C) and N2; anaerobic; high light

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0751 and Rru_A0752 are separated by 585 nucleotidesRru_A0752 and Rru_A0753 are separated by 226 nucleotides Rru_A0751: Rru_A0751 - Modification methylase HemK (NCBI), at 880,072 to 881,049 _A0751 Rru_A0752: Rru_A0752 - hypothetical protein (NCBI), at 881,635 to 882,582 _A0752 Rru_A0753: Rru_A0753 - Chaperone clpB (NCBI), at 882,809 to 885,421 _A0753 Position (kb) 881 882 883Strain fitness (log2 ratio) -2 -1 0 1at 880.995 kb on + strandat 881.103 kb on + strandat 881.142 kb on + strandat 881.378 kb on + strandat 881.379 kb on - strandat 881.549 kb on + strandat 882.022 kb on + strand, within Rru_A0752at 882.023 kb on - strand, within Rru_A0752at 882.049 kb on + strand, within Rru_A0752at 882.651 kb on - strandat 882.651 kb on - strandat 882.651 kb on - strandat 882.714 kb on + strandat 882.715 kb on - strandat 882.715 kb on - strandat 882.715 kb on - strandat 882.715 kb on - strandat 882.715 kb on - strandat 882.715 kb on - strandat 882.718 kb on + strandat 882.719 kb on - strandat 882.729 kb on + strandat 882.729 kb on + strandat 882.729 kb on + strandat 882.729 kb on + strandat 882.730 kb on - strandat 882.757 kb on + strandat 882.758 kb on - strandat 882.758 kb on - strandat 882.785 kb on - strandat 882.803 kb on + strandat 882.803 kb on + strandat 882.804 kb on - strandat 882.804 kb on - strandat 882.809 kb on - strandat 882.931 kb on + strandat 882.931 kb on + strandat 882.931 kb on + strandat 882.931 kb on + strandat 882.932 kb on - strandat 883.049 kb on + strandat 883.049 kb on + strandat 883.049 kb on + strandat 883.049 kb on + strandat 883.049 kb on + strandat 883.049 kb on + strandat 883.050 kb on - strandat 883.050 kb on - strandat 883.050 kb on - strandat 883.280 kb on + strand, within Rru_A0753at 883.281 kb on - strand, within Rru_A0753at 883.298 kb on + strand, within Rru_A0753at 883.298 kb on + strand, within Rru_A0753at 883.299 kb on - strand, within Rru_A0753at 883.299 kb on - strand, within Rru_A0753

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic Acid (C) and N2; anaerobic; high light
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880,995 + +0.2
881,103 + -0.0
881,142 + -0.1
881,378 + +0.3
881,379 - +0.5
881,549 + -0.5
882,022 + Rru_A0752 0.41 -0.8
882,023 - Rru_A0752 0.41 -1.4
882,049 + Rru_A0752 0.44 -2.1
882,651 - -0.3
882,651 - +0.5
882,651 - -0.8
882,714 + +0.1
882,715 - +0.5
882,715 - +0.5
882,715 - +0.5
882,715 - -1.7
882,715 - -0.7
882,715 - -1.5
882,718 + +0.1
882,719 - -0.1
882,729 + +0.1
882,729 + -0.6
882,729 + -0.4
882,729 + -0.1
882,730 - +0.4
882,757 + +0.2
882,758 - -1.0
882,758 - -0.8
882,785 - -0.7
882,803 + -0.4
882,803 + -0.2
882,804 - -0.8
882,804 - -0.7
882,809 - +0.5
882,931 + -0.8
882,931 + -2.5
882,931 + -0.5
882,931 + -1.9
882,932 - -1.7
883,049 + -0.9
883,049 + +0.5
883,049 + +0.5
883,049 + -1.2
883,049 + -2.3
883,049 + -0.2
883,050 - +0.1
883,050 - +0.1
883,050 - -1.8
883,280 + Rru_A0753 0.18 +0.2
883,281 - Rru_A0753 0.18 +0.7
883,298 + Rru_A0753 0.19 -0.3
883,298 + Rru_A0753 0.19 +0.1
883,299 - Rru_A0753 0.19 -0.9
883,299 - Rru_A0753 0.19 -1.5

Or see this region's nucleotide sequence