Experiment: L-Malic Acid (C) and N2; anaerobic; high light
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0637 and Rru_A0638 are separated by 221 nucleotides Rru_A0638 and Rru_A0639 are separated by 73 nucleotides Rru_A0639 and Rru_A0640 are separated by 137 nucleotides
Rru_A0637: Rru_A0637 - hypothetical protein (NCBI), at 758,541 to 758,927
_A0637
Rru_A0638: Rru_A0638 - hypothetical protein (NCBI), at 759,149 to 761,065
_A0638
Rru_A0639: Rru_A0639 - Regulatory protein RecX (NCBI), at 761,139 to 761,735
_A0639
Rru_A0640: Rru_A0640 - ABC-2 transporter component (NCBI), at 761,873 to 762,685
_A0640
Position (kb) 759
760
761
762 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 758.160 kb on + strand at 758.160 kb on + strand at 758.160 kb on + strand at 758.163 kb on + strand at 758.163 kb on + strand at 758.164 kb on - strand at 758.232 kb on + strand at 758.265 kb on - strand at 758.265 kb on - strand at 758.328 kb on + strand at 758.328 kb on + strand at 758.328 kb on + strand at 758.328 kb on + strand at 758.344 kb on - strand at 758.355 kb on + strand at 758.356 kb on - strand at 758.558 kb on - strand at 758.782 kb on + strand, within Rru_A0637 at 758.782 kb on + strand, within Rru_A0637 at 758.783 kb on - strand, within Rru_A0637 at 758.813 kb on - strand, within Rru_A0637 at 759.007 kb on + strand at 759.007 kb on + strand at 759.008 kb on - strand at 759.008 kb on - strand at 759.008 kb on - strand at 759.072 kb on - strand at 759.072 kb on - strand at 759.390 kb on + strand, within Rru_A0638 at 759.391 kb on - strand, within Rru_A0638 at 759.391 kb on - strand, within Rru_A0638 at 759.391 kb on - strand, within Rru_A0638 at 759.391 kb on - strand, within Rru_A0638 at 759.391 kb on - strand, within Rru_A0638 at 759.391 kb on - strand, within Rru_A0638 at 759.559 kb on + strand, within Rru_A0638 at 760.141 kb on + strand, within Rru_A0638 at 760.141 kb on + strand, within Rru_A0638 at 760.479 kb on + strand, within Rru_A0638 at 760.479 kb on + strand, within Rru_A0638 at 760.479 kb on + strand, within Rru_A0638 at 760.480 kb on - strand, within Rru_A0638 at 760.602 kb on + strand, within Rru_A0638 at 760.602 kb on + strand, within Rru_A0638 at 760.602 kb on + strand, within Rru_A0638 at 760.602 kb on + strand, within Rru_A0638 at 760.602 kb on + strand, within Rru_A0638 at 760.603 kb on - strand, within Rru_A0638 at 760.603 kb on - strand, within Rru_A0638 at 760.668 kb on + strand, within Rru_A0638 at 760.668 kb on + strand, within Rru_A0638 at 760.777 kb on + strand, within Rru_A0638 at 760.777 kb on + strand, within Rru_A0638 at 760.777 kb on + strand, within Rru_A0638 at 760.778 kb on - strand, within Rru_A0638 at 760.797 kb on - strand, within Rru_A0638 at 760.857 kb on + strand, within Rru_A0638 at 760.858 kb on - strand, within Rru_A0638 at 760.987 kb on + strand at 760.987 kb on + strand at 760.987 kb on + strand at 760.988 kb on - strand at 760.988 kb on - strand at 761.036 kb on + strand at 761.036 kb on + strand at 761.036 kb on + strand at 761.036 kb on + strand at 761.036 kb on + strand at 761.037 kb on - strand at 761.038 kb on + strand at 761.052 kb on - strand at 761.159 kb on + strand at 761.159 kb on + strand at 761.160 kb on - strand at 761.160 kb on - strand at 761.656 kb on + strand, within Rru_A0639 at 761.657 kb on - strand, within Rru_A0639 at 761.855 kb on + strand at 761.855 kb on + strand at 761.856 kb on - strand at 761.954 kb on + strand at 761.954 kb on + strand at 761.954 kb on + strand at 761.954 kb on + strand at 761.954 kb on + strand at 761.954 kb on + strand at 761.987 kb on + strand, within Rru_A0640 at 761.988 kb on - strand, within Rru_A0640 at 761.988 kb on - strand, within Rru_A0640
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic Acid (C) and N2; anaerobic; high light remove 758,160 + +0.4 758,160 + -0.2 758,160 + -1.8 758,163 + +0.5 758,163 + -1.1 758,164 - -0.6 758,232 + -0.0 758,265 - -0.4 758,265 - -0.8 758,328 + -2.8 758,328 + -0.5 758,328 + -0.5 758,328 + +0.8 758,344 - -1.0 758,355 + -0.0 758,356 - +0.4 758,558 - -0.4 758,782 + Rru_A0637 0.62 -2.3 758,782 + Rru_A0637 0.62 -2.2 758,783 - Rru_A0637 0.63 -0.5 758,813 - Rru_A0637 0.70 +0.5 759,007 + +0.5 759,007 + -0.6 759,008 - +0.0 759,008 - -0.0 759,008 - +0.0 759,072 - -0.7 759,072 - -0.6 759,390 + Rru_A0638 0.13 +0.3 759,391 - Rru_A0638 0.13 +0.1 759,391 - Rru_A0638 0.13 +0.5 759,391 - Rru_A0638 0.13 +0.2 759,391 - Rru_A0638 0.13 +0.5 759,391 - Rru_A0638 0.13 +0.4 759,391 - Rru_A0638 0.13 -0.3 759,559 + Rru_A0638 0.21 -0.0 760,141 + Rru_A0638 0.52 -0.0 760,141 + Rru_A0638 0.52 -0.7 760,479 + Rru_A0638 0.69 +0.1 760,479 + Rru_A0638 0.69 +0.2 760,479 + Rru_A0638 0.69 -0.7 760,480 - Rru_A0638 0.69 +0.5 760,602 + Rru_A0638 0.76 +1.5 760,602 + Rru_A0638 0.76 +0.5 760,602 + Rru_A0638 0.76 +0.5 760,602 + Rru_A0638 0.76 +0.7 760,602 + Rru_A0638 0.76 +0.3 760,603 - Rru_A0638 0.76 -0.4 760,603 - Rru_A0638 0.76 -2.5 760,668 + Rru_A0638 0.79 +0.5 760,668 + Rru_A0638 0.79 -0.4 760,777 + Rru_A0638 0.85 +0.1 760,777 + Rru_A0638 0.85 -0.3 760,777 + Rru_A0638 0.85 +0.7 760,778 - Rru_A0638 0.85 -0.4 760,797 - Rru_A0638 0.86 +0.7 760,857 + Rru_A0638 0.89 +1.1 760,858 - Rru_A0638 0.89 +0.5 760,987 + -0.2 760,987 + -0.1 760,987 + -0.3 760,988 - -0.6 760,988 - +0.5 761,036 + +0.1 761,036 + +0.0 761,036 + +0.5 761,036 + +1.5 761,036 + -0.2 761,037 - +0.4 761,038 + -0.4 761,052 - -0.3 761,159 + -0.2 761,159 + -0.2 761,160 - +0.3 761,160 - +0.3 761,656 + Rru_A0639 0.87 -0.5 761,657 - Rru_A0639 0.87 -0.4 761,855 + -0.5 761,855 + -0.3 761,856 - +0.3 761,954 + +0.3 761,954 + -0.5 761,954 + -0.1 761,954 + -0.0 761,954 + -0.7 761,954 + +1.3 761,987 + Rru_A0640 0.14 -0.3 761,988 - Rru_A0640 0.14 -0.7 761,988 - Rru_A0640 0.14 -0.4
Or see this region's nucleotide sequence