Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0634

Experiment: L-Malic Acid (C) and N2; anaerobic; high light

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRru_A0632 and Rru_A0633 are separated by 12 nucleotidesRru_A0633 and Rru_A0634 are separated by 11 nucleotidesRru_A0634 and Rru_A0635 are separated by 165 nucleotides Rru_A0632: Rru_A0632 - chemotaxis sensory transducer (NCBI), at 751,291 to 753,501 _A0632 Rru_A0633: Rru_A0633 - Exonuclease (NCBI), at 753,514 to 754,143 _A0633 Rru_A0634: Rru_A0634 - Cyclic nucleotide-binding domain (cNMP-BD) protein (NCBI), at 754,155 to 755,969 _A0634 Rru_A0635: Rru_A0635 - Na+/solute symporter (NCBI), at 756,135 to 757,814 _A0635 Position (kb) 754 755 756Strain fitness (log2 ratio) -2 -1 0 1at 753.156 kb on + strand, within Rru_A0632at 753.156 kb on + strand, within Rru_A0632at 753.166 kb on + strand, within Rru_A0632at 753.166 kb on + strand, within Rru_A0632at 753.166 kb on + strand, within Rru_A0632at 753.433 kb on + strandat 753.433 kb on + strandat 753.434 kb on - strandat 753.434 kb on - strandat 753.434 kb on - strandat 753.434 kb on - strandat 753.434 kb on - strandat 753.434 kb on - strandat 753.434 kb on - strandat 753.434 kb on - strandat 753.434 kb on - strandat 753.554 kb on + strandat 753.554 kb on + strandat 753.554 kb on + strandat 753.555 kb on - strandat 753.555 kb on - strandat 753.661 kb on - strand, within Rru_A0633at 753.661 kb on - strand, within Rru_A0633at 753.663 kb on - strand, within Rru_A0633at 753.663 kb on - strand, within Rru_A0633at 753.663 kb on - strand, within Rru_A0633at 753.791 kb on + strand, within Rru_A0633at 753.792 kb on - strand, within Rru_A0633at 753.794 kb on + strand, within Rru_A0633at 753.795 kb on - strand, within Rru_A0633at 753.795 kb on - strand, within Rru_A0633at 754.051 kb on + strand, within Rru_A0633at 754.051 kb on + strand, within Rru_A0633at 754.051 kb on + strand, within Rru_A0633at 754.051 kb on + strand, within Rru_A0633at 754.088 kb on + strandat 754.088 kb on + strandat 754.088 kb on + strandat 754.089 kb on - strandat 754.089 kb on - strandat 754.089 kb on - strandat 754.156 kb on + strandat 754.235 kb on + strandat 754.741 kb on + strand, within Rru_A0634at 754.741 kb on + strand, within Rru_A0634at 754.742 kb on - strand, within Rru_A0634at 754.742 kb on - strand, within Rru_A0634at 754.742 kb on - strand, within Rru_A0634at 754.742 kb on - strand, within Rru_A0634at 755.186 kb on + strand, within Rru_A0634at 755.186 kb on + strand, within Rru_A0634at 755.186 kb on + strand, within Rru_A0634at 755.186 kb on + strand, within Rru_A0634at 755.186 kb on + strand, within Rru_A0634at 755.186 kb on + strand, within Rru_A0634at 755.186 kb on + strand, within Rru_A0634at 755.186 kb on + strand, within Rru_A0634at 755.186 kb on + strand, within Rru_A0634at 755.186 kb on + strand, within Rru_A0634at 755.187 kb on - strand, within Rru_A0634at 755.187 kb on - strand, within Rru_A0634at 755.187 kb on - strand, within Rru_A0634at 755.187 kb on - strand, within Rru_A0634at 755.187 kb on - strand, within Rru_A0634at 755.187 kb on - strand, within Rru_A0634at 755.187 kb on - strand, within Rru_A0634at 755.187 kb on - strand, within Rru_A0634at 755.188 kb on + strand, within Rru_A0634at 755.188 kb on + strand, within Rru_A0634at 755.188 kb on + strand, within Rru_A0634at 755.189 kb on - strand, within Rru_A0634at 755.189 kb on - strand, within Rru_A0634at 755.881 kb on + strandat 755.881 kb on + strandat 755.881 kb on + strandat 755.882 kb on - strandat 755.882 kb on - strandat 756.060 kb on - strandat 756.060 kb on - strandat 756.060 kb on - strandat 756.184 kb on + strandat 756.184 kb on + strandat 756.185 kb on - strandat 756.185 kb on - strandat 756.185 kb on - strandat 756.299 kb on - strandat 756.625 kb on + strand, within Rru_A0635at 756.865 kb on + strand, within Rru_A0635at 756.865 kb on + strand, within Rru_A0635at 756.866 kb on - strand, within Rru_A0635at 756.866 kb on - strand, within Rru_A0635at 756.866 kb on - strand, within Rru_A0635at 756.866 kb on - strand, within Rru_A0635at 756.871 kb on + strand, within Rru_A0635at 756.871 kb on + strand, within Rru_A0635at 756.872 kb on - strand, within Rru_A0635at 756.892 kb on + strand, within Rru_A0635at 756.893 kb on - strand, within Rru_A0635at 756.905 kb on + strand, within Rru_A0635at 756.906 kb on - strand, within Rru_A0635

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic Acid (C) and N2; anaerobic; high light
remove
753,156 + Rru_A0632 0.84 -0.3
753,156 + Rru_A0632 0.84 +0.8
753,166 + Rru_A0632 0.85 -0.2
753,166 + Rru_A0632 0.85 -0.2
753,166 + Rru_A0632 0.85 -0.1
753,433 + +0.6
753,433 + -0.2
753,434 - +0.5
753,434 - -0.8
753,434 - +0.6
753,434 - -0.0
753,434 - +0.1
753,434 - +0.1
753,434 - -1.7
753,434 - +0.1
753,434 - -0.2
753,554 + -0.2
753,554 + +0.2
753,554 + -0.3
753,555 - +0.5
753,555 - +0.3
753,661 - Rru_A0633 0.23 +0.3
753,661 - Rru_A0633 0.23 +0.2
753,663 - Rru_A0633 0.24 +0.5
753,663 - Rru_A0633 0.24 -0.6
753,663 - Rru_A0633 0.24 -0.3
753,791 + Rru_A0633 0.44 -0.5
753,792 - Rru_A0633 0.44 -0.7
753,794 + Rru_A0633 0.44 -0.0
753,795 - Rru_A0633 0.45 -1.0
753,795 - Rru_A0633 0.45 +0.2
754,051 + Rru_A0633 0.85 -0.2
754,051 + Rru_A0633 0.85 +0.4
754,051 + Rru_A0633 0.85 -1.3
754,051 + Rru_A0633 0.85 -0.9
754,088 + +0.5
754,088 + +0.7
754,088 + +0.5
754,089 - +0.5
754,089 - -0.2
754,089 - +0.2
754,156 + -0.8
754,235 + -1.8
754,741 + Rru_A0634 0.32 -2.7
754,741 + Rru_A0634 0.32 +0.5
754,742 - Rru_A0634 0.32 -2.0
754,742 - Rru_A0634 0.32 -2.0
754,742 - Rru_A0634 0.32 +0.5
754,742 - Rru_A0634 0.32 -1.8
755,186 + Rru_A0634 0.57 +0.5
755,186 + Rru_A0634 0.57 -2.1
755,186 + Rru_A0634 0.57 -0.8
755,186 + Rru_A0634 0.57 -0.8
755,186 + Rru_A0634 0.57 -0.4
755,186 + Rru_A0634 0.57 -0.7
755,186 + Rru_A0634 0.57 -0.0
755,186 + Rru_A0634 0.57 -0.5
755,186 + Rru_A0634 0.57 -0.8
755,186 + Rru_A0634 0.57 -0.6
755,187 - Rru_A0634 0.57 -0.5
755,187 - Rru_A0634 0.57 -0.5
755,187 - Rru_A0634 0.57 -0.8
755,187 - Rru_A0634 0.57 +1.6
755,187 - Rru_A0634 0.57 -0.1
755,187 - Rru_A0634 0.57 -0.9
755,187 - Rru_A0634 0.57 -0.1
755,187 - Rru_A0634 0.57 -0.6
755,188 + Rru_A0634 0.57 +0.3
755,188 + Rru_A0634 0.57 -0.9
755,188 + Rru_A0634 0.57 -1.5
755,189 - Rru_A0634 0.57 +1.5
755,189 - Rru_A0634 0.57 -0.9
755,881 + -0.7
755,881 + -0.8
755,881 + +0.5
755,882 - -0.3
755,882 - +0.4
756,060 - +0.3
756,060 - -0.6
756,060 - -0.8
756,184 + +0.3
756,184 + -0.1
756,185 - -0.6
756,185 - -0.3
756,185 - +0.5
756,299 - +0.5
756,625 + Rru_A0635 0.29 +0.5
756,865 + Rru_A0635 0.43 +0.5
756,865 + Rru_A0635 0.43 -0.1
756,866 - Rru_A0635 0.44 +0.0
756,866 - Rru_A0635 0.44 -0.8
756,866 - Rru_A0635 0.44 +0.5
756,866 - Rru_A0635 0.44 -0.2
756,871 + Rru_A0635 0.44 -0.1
756,871 + Rru_A0635 0.44 +0.1
756,872 - Rru_A0635 0.44 +1.7
756,892 + Rru_A0635 0.45 +0.2
756,893 - Rru_A0635 0.45 +0.0
756,905 + Rru_A0635 0.46 +0.5
756,906 - Rru_A0635 0.46 -0.2

Or see this region's nucleotide sequence