Experiment: L-Malic Acid (C) and N2; anaerobic; high light
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0596 and Rru_A0597 are separated by 295 nucleotides Rru_A0597 and Rru_A0598 are separated by 394 nucleotides
Rru_A0596: Rru_A0596 - Fructose-bisphosphate aldolase, class II, Calvin cycle subtype (NCBI), at 708,365 to 709,429
_A0596
Rru_A0597: Rru_A0597 - Protein of unknown function DUF1526 (NCBI), at 709,725 to 710,399
_A0597
Rru_A0598: Rru_A0598 - phosphate ABC transporter, periplasmic binding protein (NCBI), at 710,794 to 711,822
_A0598
Position (kb) 709
710
711 Strain fitness (log2 ratio) -2
-1
0
1
2 at 708.728 kb on + strand, within Rru_A0596 at 709.043 kb on - strand, within Rru_A0596 at 709.130 kb on + strand, within Rru_A0596 at 709.131 kb on - strand, within Rru_A0596 at 709.274 kb on + strand, within Rru_A0596 at 709.427 kb on + strand at 709.427 kb on + strand at 709.443 kb on - strand at 709.456 kb on + strand at 709.782 kb on + strand at 709.782 kb on + strand at 709.836 kb on + strand, within Rru_A0597 at 709.837 kb on - strand, within Rru_A0597 at 709.837 kb on - strand, within Rru_A0597 at 709.840 kb on + strand, within Rru_A0597 at 709.840 kb on + strand, within Rru_A0597 at 709.840 kb on + strand, within Rru_A0597 at 709.841 kb on - strand, within Rru_A0597 at 709.841 kb on - strand, within Rru_A0597 at 709.883 kb on + strand, within Rru_A0597 at 709.883 kb on + strand, within Rru_A0597 at 709.883 kb on + strand, within Rru_A0597 at 709.883 kb on + strand, within Rru_A0597 at 709.883 kb on + strand, within Rru_A0597 at 709.884 kb on - strand, within Rru_A0597 at 709.924 kb on + strand, within Rru_A0597 at 709.935 kb on + strand, within Rru_A0597 at 709.935 kb on + strand, within Rru_A0597 at 710.000 kb on + strand, within Rru_A0597 at 710.147 kb on - strand, within Rru_A0597 at 710.290 kb on + strand, within Rru_A0597 at 710.299 kb on + strand, within Rru_A0597 at 710.300 kb on - strand, within Rru_A0597 at 710.300 kb on - strand, within Rru_A0597 at 710.300 kb on - strand, within Rru_A0597 at 710.475 kb on + strand at 710.475 kb on + strand at 710.601 kb on + strand at 710.601 kb on + strand at 710.708 kb on + strand at 710.709 kb on - strand at 710.747 kb on + strand at 710.791 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic Acid (C) and N2; anaerobic; high light remove 708,728 + Rru_A0596 0.34 -1.8 709,043 - Rru_A0596 0.64 -1.1 709,130 + Rru_A0596 0.72 +0.5 709,131 - Rru_A0596 0.72 +0.5 709,274 + Rru_A0596 0.85 -0.5 709,427 + -1.2 709,427 + -0.0 709,443 - +0.5 709,456 + -1.2 709,782 + -0.2 709,782 + -0.4 709,836 + Rru_A0597 0.16 +0.0 709,837 - Rru_A0597 0.17 -1.0 709,837 - Rru_A0597 0.17 -0.0 709,840 + Rru_A0597 0.17 +0.5 709,840 + Rru_A0597 0.17 +0.2 709,840 + Rru_A0597 0.17 -1.0 709,841 - Rru_A0597 0.17 -0.5 709,841 - Rru_A0597 0.17 +0.1 709,883 + Rru_A0597 0.23 +0.5 709,883 + Rru_A0597 0.23 +0.5 709,883 + Rru_A0597 0.23 -0.5 709,883 + Rru_A0597 0.23 -0.6 709,883 + Rru_A0597 0.23 -1.0 709,884 - Rru_A0597 0.24 -0.3 709,924 + Rru_A0597 0.29 -0.3 709,935 + Rru_A0597 0.31 -0.9 709,935 + Rru_A0597 0.31 -1.1 710,000 + Rru_A0597 0.41 -0.5 710,147 - Rru_A0597 0.63 -0.6 710,290 + Rru_A0597 0.84 -0.6 710,299 + Rru_A0597 0.85 -0.3 710,300 - Rru_A0597 0.85 +0.2 710,300 - Rru_A0597 0.85 -1.0 710,300 - Rru_A0597 0.85 +0.3 710,475 + -0.9 710,475 + +2.1 710,601 + +0.0 710,601 + +0.7 710,708 + -1.4 710,709 - -0.7 710,747 + -2.0 710,791 - +0.2
Or see this region's nucleotide sequence