Experiment: L-Malic Acid (C) and N2; anaerobic; high light
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0441 and Rru_A0442 are separated by 22 nucleotides Rru_A0442 and Rru_A0443 are separated by 93 nucleotides Rru_A0443 and Rru_A0444 are separated by 205 nucleotides
Rru_A0441: Rru_A0441 - chemotaxis sensory transducer (NCBI), at 518,604 to 520,565
_A0441
Rru_A0442: Rru_A0442 - FAD linked oxidase-like (NCBI), at 520,588 to 522,024
_A0442
Rru_A0443: Rru_A0443 - hypothetical protein (NCBI), at 522,118 to 522,768
_A0443
Rru_A0444: Rru_A0444 - Sua5/YciO/YrdC/YwlC (NCBI), at 522,974 to 523,942
_A0444
Position (kb) 520
521
522
523 Strain fitness (log2 ratio) -2
-1
0
1 at 520.564 kb on - strand at 520.564 kb on - strand at 522.068 kb on - strand at 522.082 kb on + strand at 522.082 kb on + strand at 522.082 kb on + strand at 522.083 kb on - strand at 522.083 kb on - strand at 522.083 kb on - strand at 522.083 kb on - strand at 522.083 kb on - strand at 522.181 kb on + strand at 522.223 kb on + strand, within Rru_A0443 at 522.410 kb on + strand, within Rru_A0443 at 522.418 kb on - strand, within Rru_A0443 at 522.546 kb on - strand, within Rru_A0443 at 522.562 kb on - strand, within Rru_A0443 at 522.563 kb on + strand, within Rru_A0443 at 522.563 kb on + strand, within Rru_A0443 at 522.563 kb on + strand, within Rru_A0443 at 522.564 kb on - strand, within Rru_A0443 at 522.564 kb on - strand, within Rru_A0443 at 522.564 kb on - strand, within Rru_A0443 at 522.564 kb on - strand, within Rru_A0443 at 522.564 kb on - strand, within Rru_A0443 at 522.564 kb on - strand, within Rru_A0443 at 522.617 kb on + strand, within Rru_A0443 at 522.617 kb on + strand, within Rru_A0443 at 522.617 kb on + strand, within Rru_A0443 at 522.618 kb on - strand, within Rru_A0443 at 522.618 kb on - strand, within Rru_A0443 at 522.618 kb on - strand, within Rru_A0443 at 522.618 kb on - strand, within Rru_A0443 at 522.618 kb on - strand, within Rru_A0443 at 522.803 kb on + strand at 522.803 kb on + strand at 522.803 kb on + strand at 522.804 kb on - strand at 522.804 kb on - strand at 522.889 kb on + strand at 522.889 kb on + strand at 522.970 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic Acid (C) and N2; anaerobic; high light remove 520,564 - +0.5 520,564 - +0.0 522,068 - +0.1 522,082 + +0.3 522,082 + +0.3 522,082 + -0.1 522,083 - -0.7 522,083 - +0.5 522,083 - -0.8 522,083 - +0.5 522,083 - -0.2 522,181 + +0.4 522,223 + Rru_A0443 0.16 +0.3 522,410 + Rru_A0443 0.45 -0.6 522,418 - Rru_A0443 0.46 -0.4 522,546 - Rru_A0443 0.66 +0.6 522,562 - Rru_A0443 0.68 +0.8 522,563 + Rru_A0443 0.68 -0.2 522,563 + Rru_A0443 0.68 +0.8 522,563 + Rru_A0443 0.68 +1.0 522,564 - Rru_A0443 0.69 -0.3 522,564 - Rru_A0443 0.69 +0.1 522,564 - Rru_A0443 0.69 -0.4 522,564 - Rru_A0443 0.69 +0.6 522,564 - Rru_A0443 0.69 -0.8 522,564 - Rru_A0443 0.69 -0.1 522,617 + Rru_A0443 0.77 +0.1 522,617 + Rru_A0443 0.77 -0.5 522,617 + Rru_A0443 0.77 +0.2 522,618 - Rru_A0443 0.77 -0.3 522,618 - Rru_A0443 0.77 -2.3 522,618 - Rru_A0443 0.77 -0.4 522,618 - Rru_A0443 0.77 -0.3 522,618 - Rru_A0443 0.77 +0.9 522,803 + +0.5 522,803 + -0.1 522,803 + +0.3 522,804 - +0.9 522,804 - +0.4 522,889 + -1.2 522,889 + -0.3 522,970 - -0.5
Or see this region's nucleotide sequence