Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0319

Experiment: L-Malic Acid (C) and N2; anaerobic; high light

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0317 and Rru_A0318 are separated by 8 nucleotidesRru_A0318 and Rru_A0319 overlap by 8 nucleotidesRru_A0319 and Rru_A0320 are separated by 13 nucleotides Rru_A0317: Rru_A0317 - Respiratory-chain NADH dehydrogenase, subunit 1 (NCBI), at 387,380 to 388,282 _A0317 Rru_A0318: Rru_A0318 - 4Fe-4S ferredoxin, iron-sulfur binding (NCBI), at 388,291 to 388,818 _A0318 Rru_A0319: Rru_A0319 - NADH-ubiquinone oxidoreductase, chain 4L (NCBI), at 388,811 to 389,476 _A0319 Rru_A0320: Rru_A0320 - NADH dehydrogenase (quinone) (NCBI), at 389,490 to 391,085 _A0320 Position (kb) 388 389 390Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 387.867 kb on - strand, within Rru_A0317at 387.867 kb on - strand, within Rru_A0317at 388.166 kb on - strand, within Rru_A0317at 388.352 kb on - strand, within Rru_A0318at 388.832 kb on + strandat 388.907 kb on + strand, within Rru_A0319at 388.908 kb on - strand, within Rru_A0319at 388.908 kb on - strand, within Rru_A0319at 388.980 kb on - strand, within Rru_A0319at 388.983 kb on - strand, within Rru_A0319at 388.983 kb on - strand, within Rru_A0319at 389.042 kb on + strand, within Rru_A0319at 389.042 kb on + strand, within Rru_A0319at 389.043 kb on - strand, within Rru_A0319at 389.244 kb on - strand, within Rru_A0319at 389.244 kb on - strand, within Rru_A0319at 389.244 kb on - strand, within Rru_A0319at 389.244 kb on - strand, within Rru_A0319at 389.244 kb on - strand, within Rru_A0319at 389.405 kb on + strand, within Rru_A0319at 389.405 kb on + strand, within Rru_A0319at 389.405 kb on + strand, within Rru_A0319at 389.405 kb on + strand, within Rru_A0319at 389.406 kb on - strand, within Rru_A0319at 389.406 kb on - strand, within Rru_A0319at 389.406 kb on - strand, within Rru_A0319at 389.455 kb on + strandat 389.455 kb on + strandat 389.506 kb on + strandat 389.507 kb on - strandat 389.509 kb on + strandat 389.510 kb on - strandat 389.510 kb on - strandat 389.519 kb on - strandat 389.519 kb on - strandat 389.553 kb on + strandat 389.554 kb on - strandat 389.799 kb on + strand, within Rru_A0320at 389.800 kb on - strand, within Rru_A0320at 389.823 kb on + strand, within Rru_A0320at 389.895 kb on + strand, within Rru_A0320at 389.895 kb on + strand, within Rru_A0320at 389.895 kb on + strand, within Rru_A0320at 389.895 kb on + strand, within Rru_A0320at 389.895 kb on + strand, within Rru_A0320at 389.895 kb on + strand, within Rru_A0320at 389.895 kb on + strand, within Rru_A0320at 389.895 kb on + strand, within Rru_A0320at 389.896 kb on - strand, within Rru_A0320at 389.896 kb on - strand, within Rru_A0320at 389.896 kb on - strand, within Rru_A0320at 389.896 kb on - strand, within Rru_A0320at 389.896 kb on - strand, within Rru_A0320at 389.896 kb on - strand, within Rru_A0320at 389.896 kb on - strand, within Rru_A0320at 389.943 kb on + strand, within Rru_A0320at 389.943 kb on + strand, within Rru_A0320at 389.944 kb on - strand, within Rru_A0320at 389.944 kb on - strand, within Rru_A0320at 389.976 kb on + strand, within Rru_A0320at 389.977 kb on - strand, within Rru_A0320at 389.978 kb on + strand, within Rru_A0320at 389.978 kb on + strand, within Rru_A0320at 389.978 kb on + strand, within Rru_A0320at 389.978 kb on + strand, within Rru_A0320at 389.978 kb on + strand, within Rru_A0320at 389.978 kb on + strand, within Rru_A0320at 389.978 kb on + strand, within Rru_A0320at 389.979 kb on - strand, within Rru_A0320at 389.979 kb on - strand, within Rru_A0320at 389.979 kb on - strand, within Rru_A0320at 389.983 kb on - strand, within Rru_A0320at 390.306 kb on + strand, within Rru_A0320at 390.306 kb on + strand, within Rru_A0320at 390.306 kb on + strand, within Rru_A0320at 390.307 kb on - strand, within Rru_A0320at 390.307 kb on - strand, within Rru_A0320at 390.307 kb on - strand, within Rru_A0320at 390.418 kb on - strand, within Rru_A0320at 390.418 kb on - strand, within Rru_A0320at 390.441 kb on + strand, within Rru_A0320at 390.441 kb on + strand, within Rru_A0320at 390.441 kb on + strand, within Rru_A0320at 390.441 kb on + strand, within Rru_A0320at 390.442 kb on - strand, within Rru_A0320at 390.443 kb on + strand, within Rru_A0320at 390.443 kb on + strand, within Rru_A0320at 390.444 kb on - strand, within Rru_A0320at 390.444 kb on - strand, within Rru_A0320at 390.444 kb on - strand, within Rru_A0320at 390.471 kb on + strand, within Rru_A0320at 390.472 kb on - strand, within Rru_A0320at 390.472 kb on - strand, within Rru_A0320at 390.472 kb on - strand, within Rru_A0320

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic Acid (C) and N2; anaerobic; high light
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387,867 - Rru_A0317 0.54 +0.2
387,867 - Rru_A0317 0.54 -0.1
388,166 - Rru_A0317 0.87 -0.0
388,352 - Rru_A0318 0.12 -0.2
388,832 + -1.1
388,907 + Rru_A0319 0.14 -1.1
388,908 - Rru_A0319 0.15 +0.4
388,908 - Rru_A0319 0.15 -1.3
388,980 - Rru_A0319 0.25 -0.2
388,983 - Rru_A0319 0.26 -0.8
388,983 - Rru_A0319 0.26 +0.7
389,042 + Rru_A0319 0.35 -0.9
389,042 + Rru_A0319 0.35 +0.6
389,043 - Rru_A0319 0.35 +0.2
389,244 - Rru_A0319 0.65 -0.6
389,244 - Rru_A0319 0.65 -0.9
389,244 - Rru_A0319 0.65 -1.2
389,244 - Rru_A0319 0.65 +0.7
389,244 - Rru_A0319 0.65 -0.2
389,405 + Rru_A0319 0.89 -2.8
389,405 + Rru_A0319 0.89 -1.3
389,405 + Rru_A0319 0.89 -3.8
389,405 + Rru_A0319 0.89 -1.5
389,406 - Rru_A0319 0.89 -0.5
389,406 - Rru_A0319 0.89 -0.1
389,406 - Rru_A0319 0.89 +0.6
389,455 + -2.7
389,455 + -0.9
389,506 + -0.1
389,507 - -0.5
389,509 + -0.6
389,510 - +0.2
389,510 - -0.2
389,519 - -0.6
389,519 - +0.0
389,553 + -1.7
389,554 - -0.7
389,799 + Rru_A0320 0.19 +1.8
389,800 - Rru_A0320 0.19 +0.5
389,823 + Rru_A0320 0.21 +0.5
389,895 + Rru_A0320 0.25 -0.4
389,895 + Rru_A0320 0.25 -0.0
389,895 + Rru_A0320 0.25 +0.1
389,895 + Rru_A0320 0.25 -0.3
389,895 + Rru_A0320 0.25 -0.4
389,895 + Rru_A0320 0.25 -0.8
389,895 + Rru_A0320 0.25 -0.5
389,895 + Rru_A0320 0.25 -0.7
389,896 - Rru_A0320 0.25 -0.0
389,896 - Rru_A0320 0.25 +0.6
389,896 - Rru_A0320 0.25 +0.5
389,896 - Rru_A0320 0.25 -0.3
389,896 - Rru_A0320 0.25 -0.4
389,896 - Rru_A0320 0.25 -0.3
389,896 - Rru_A0320 0.25 -0.9
389,943 + Rru_A0320 0.28 -0.6
389,943 + Rru_A0320 0.28 -0.5
389,944 - Rru_A0320 0.28 +0.5
389,944 - Rru_A0320 0.28 -1.6
389,976 + Rru_A0320 0.30 -0.5
389,977 - Rru_A0320 0.31 +0.3
389,978 + Rru_A0320 0.31 -0.4
389,978 + Rru_A0320 0.31 -0.8
389,978 + Rru_A0320 0.31 -0.7
389,978 + Rru_A0320 0.31 +0.2
389,978 + Rru_A0320 0.31 -0.4
389,978 + Rru_A0320 0.31 +2.3
389,978 + Rru_A0320 0.31 +1.3
389,979 - Rru_A0320 0.31 +0.0
389,979 - Rru_A0320 0.31 -0.3
389,979 - Rru_A0320 0.31 -0.3
389,983 - Rru_A0320 0.31 -0.2
390,306 + Rru_A0320 0.51 -1.1
390,306 + Rru_A0320 0.51 -0.2
390,306 + Rru_A0320 0.51 +0.5
390,307 - Rru_A0320 0.51 +1.5
390,307 - Rru_A0320 0.51 +1.1
390,307 - Rru_A0320 0.51 +0.1
390,418 - Rru_A0320 0.58 -0.4
390,418 - Rru_A0320 0.58 +0.3
390,441 + Rru_A0320 0.60 -0.3
390,441 + Rru_A0320 0.60 -0.8
390,441 + Rru_A0320 0.60 -0.9
390,441 + Rru_A0320 0.60 -0.9
390,442 - Rru_A0320 0.60 +0.2
390,443 + Rru_A0320 0.60 -0.8
390,443 + Rru_A0320 0.60 -2.3
390,444 - Rru_A0320 0.60 +0.2
390,444 - Rru_A0320 0.60 -0.0
390,444 - Rru_A0320 0.60 -0.2
390,471 + Rru_A0320 0.61 -1.5
390,472 - Rru_A0320 0.62 +0.1
390,472 - Rru_A0320 0.62 -0.2
390,472 - Rru_A0320 0.62 -0.6

Or see this region's nucleotide sequence