Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0282

Experiment: L-Malic Acid (C) and N2; anaerobic; high light

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0281 and Rru_A0282 are separated by 172 nucleotidesRru_A0282 and Rru_A0283 are separated by 280 nucleotidesRru_A0283 and Rru_A0284 are separated by 33 nucleotides Rru_A0281: Rru_A0281 - Queuosine biosynthesis protein (NCBI), at 345,720 to 346,757 _A0281 Rru_A0282: Rru_A0282 - Protein of unknown function DUF204 (NCBI), at 346,930 to 347,511 _A0282 Rru_A0283: Rru_A0283 - hypothetical protein (NCBI), at 347,792 to 348,295 _A0283 Rru_A0284: Rru_A0284 - acetolactate synthase (NCBI), at 348,329 to 350,059 _A0284 Position (kb) 346 347 348Strain fitness (log2 ratio) -2 -1 0 1at 346.109 kb on + strand, within Rru_A0281at 346.218 kb on + strand, within Rru_A0281at 346.218 kb on + strand, within Rru_A0281at 346.218 kb on + strand, within Rru_A0281at 346.218 kb on + strand, within Rru_A0281at 346.219 kb on - strand, within Rru_A0281at 346.219 kb on - strand, within Rru_A0281at 346.219 kb on - strand, within Rru_A0281at 346.262 kb on - strand, within Rru_A0281at 346.310 kb on + strand, within Rru_A0281at 346.312 kb on + strand, within Rru_A0281at 346.312 kb on + strand, within Rru_A0281at 346.313 kb on - strand, within Rru_A0281at 346.313 kb on - strand, within Rru_A0281at 346.329 kb on - strand, within Rru_A0281at 346.329 kb on - strand, within Rru_A0281at 346.329 kb on - strand, within Rru_A0281at 346.336 kb on + strand, within Rru_A0281at 346.337 kb on - strand, within Rru_A0281at 346.337 kb on - strand, within Rru_A0281at 346.601 kb on + strand, within Rru_A0281at 346.867 kb on - strandat 347.100 kb on + strand, within Rru_A0282at 347.100 kb on + strand, within Rru_A0282at 347.100 kb on + strand, within Rru_A0282at 347.387 kb on + strand, within Rru_A0282at 347.387 kb on + strand, within Rru_A0282at 347.535 kb on + strandat 347.536 kb on - strandat 347.716 kb on + strandat 347.716 kb on + strandat 347.718 kb on + strandat 347.718 kb on + strandat 347.718 kb on + strandat 347.718 kb on + strandat 347.718 kb on + strandat 347.718 kb on + strandat 347.718 kb on + strandat 347.718 kb on + strandat 347.718 kb on + strandat 347.719 kb on - strandat 347.719 kb on - strandat 347.719 kb on - strandat 347.719 kb on - strandat 347.719 kb on - strandat 347.719 kb on - strandat 347.719 kb on - strandat 347.719 kb on - strandat 347.719 kb on - strandat 347.719 kb on - strandat 347.719 kb on - strandat 347.719 kb on - strandat 347.891 kb on + strand, within Rru_A0283at 347.891 kb on + strand, within Rru_A0283at 347.891 kb on + strand, within Rru_A0283at 347.892 kb on - strand, within Rru_A0283at 348.212 kb on + strand, within Rru_A0283at 348.212 kb on + strand, within Rru_A0283at 348.212 kb on + strand, within Rru_A0283at 348.212 kb on + strand, within Rru_A0283at 348.212 kb on + strand, within Rru_A0283at 348.212 kb on + strand, within Rru_A0283at 348.213 kb on - strand, within Rru_A0283at 348.213 kb on - strand, within Rru_A0283at 348.213 kb on - strand, within Rru_A0283at 348.213 kb on - strand, within Rru_A0283at 348.273 kb on + strandat 348.273 kb on + strandat 348.274 kb on - strandat 348.349 kb on + strandat 348.406 kb on + strandat 348.461 kb on + strandat 348.461 kb on + strandat 348.461 kb on + strandat 348.461 kb on + strandat 348.462 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic Acid (C) and N2; anaerobic; high light
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346,109 + Rru_A0281 0.37 -0.9
346,218 + Rru_A0281 0.48 -0.8
346,218 + Rru_A0281 0.48 +0.1
346,218 + Rru_A0281 0.48 -0.2
346,218 + Rru_A0281 0.48 -0.2
346,219 - Rru_A0281 0.48 -0.8
346,219 - Rru_A0281 0.48 -0.1
346,219 - Rru_A0281 0.48 -0.2
346,262 - Rru_A0281 0.52 -1.1
346,310 + Rru_A0281 0.57 -0.8
346,312 + Rru_A0281 0.57 -0.7
346,312 + Rru_A0281 0.57 +0.0
346,313 - Rru_A0281 0.57 -0.6
346,313 - Rru_A0281 0.57 -0.5
346,329 - Rru_A0281 0.59 -1.5
346,329 - Rru_A0281 0.59 -0.5
346,329 - Rru_A0281 0.59 -0.2
346,336 + Rru_A0281 0.59 +0.1
346,337 - Rru_A0281 0.59 +1.0
346,337 - Rru_A0281 0.59 -2.1
346,601 + Rru_A0281 0.85 -0.2
346,867 - -0.2
347,100 + Rru_A0282 0.29 -0.5
347,100 + Rru_A0282 0.29 -0.9
347,100 + Rru_A0282 0.29 -0.3
347,387 + Rru_A0282 0.79 -0.5
347,387 + Rru_A0282 0.79 -1.2
347,535 + -0.4
347,536 - -0.0
347,716 + +0.1
347,716 + +0.7
347,718 + +0.2
347,718 + -0.2
347,718 + +0.1
347,718 + -0.1
347,718 + +0.9
347,718 + +1.2
347,718 + -0.0
347,718 + -0.6
347,718 + -0.1
347,719 - -0.5
347,719 - -1.2
347,719 - -0.0
347,719 - -0.3
347,719 - +0.3
347,719 - -0.2
347,719 - -1.4
347,719 - -0.1
347,719 - -0.2
347,719 - -0.6
347,719 - -0.2
347,719 - -0.2
347,891 + Rru_A0283 0.20 +0.3
347,891 + Rru_A0283 0.20 +0.1
347,891 + Rru_A0283 0.20 -0.9
347,892 - Rru_A0283 0.20 +0.5
348,212 + Rru_A0283 0.83 +0.5
348,212 + Rru_A0283 0.83 +0.2
348,212 + Rru_A0283 0.83 -0.5
348,212 + Rru_A0283 0.83 -1.5
348,212 + Rru_A0283 0.83 +0.5
348,212 + Rru_A0283 0.83 +0.9
348,213 - Rru_A0283 0.84 +0.2
348,213 - Rru_A0283 0.84 +0.4
348,213 - Rru_A0283 0.84 +0.5
348,213 - Rru_A0283 0.84 +0.1
348,273 + +0.2
348,273 + -0.1
348,274 - +0.5
348,349 + +0.5
348,406 + -0.5
348,461 + +0.5
348,461 + -0.5
348,461 + -0.8
348,461 + -0.2
348,462 - -0.4

Or see this region's nucleotide sequence