Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0256

Experiment: L-Malic Acid (C) and N2; anaerobic; high light

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0254 and Rru_A0255 are separated by 153 nucleotidesRru_A0255 and Rru_A0256 overlap by 4 nucleotidesRru_A0256 and Rru_A0257 are separated by 70 nucleotides Rru_A0254: Rru_A0254 - NAD-dependent epimerase/dehydratase (NCBI), at 315,943 to 316,932 _A0254 Rru_A0255: Rru_A0255 - hypothetical protein (NCBI), at 317,086 to 317,742 _A0255 Rru_A0256: Rru_A0256 - GCN5-related N-acetyltransferase (NCBI), at 317,739 to 318,245 _A0256 Rru_A0257: Rru_A0257 - Protein of unknown function DUF898 (NCBI), at 318,316 to 319,392 _A0257 Position (kb) 317 318 319Strain fitness (log2 ratio) -2 -1 0 1 2at 316.762 kb on + strand, within Rru_A0254at 316.813 kb on - strand, within Rru_A0254at 316.813 kb on - strand, within Rru_A0254at 316.813 kb on - strand, within Rru_A0254at 316.891 kb on + strandat 316.891 kb on + strandat 316.891 kb on + strandat 316.891 kb on + strandat 316.891 kb on + strandat 316.892 kb on - strandat 316.892 kb on - strandat 316.930 kb on + strandat 317.306 kb on - strand, within Rru_A0255at 317.306 kb on - strand, within Rru_A0255at 317.793 kb on + strand, within Rru_A0256at 317.793 kb on + strand, within Rru_A0256at 317.793 kb on + strand, within Rru_A0256at 317.794 kb on - strand, within Rru_A0256at 317.794 kb on - strand, within Rru_A0256at 318.003 kb on + strand, within Rru_A0256at 318.003 kb on + strand, within Rru_A0256at 318.003 kb on + strand, within Rru_A0256at 318.003 kb on + strand, within Rru_A0256at 318.003 kb on + strand, within Rru_A0256at 318.004 kb on - strand, within Rru_A0256at 318.004 kb on - strand, within Rru_A0256at 318.004 kb on - strand, within Rru_A0256at 318.004 kb on - strand, within Rru_A0256at 318.004 kb on - strand, within Rru_A0256at 318.005 kb on + strand, within Rru_A0256at 318.005 kb on + strand, within Rru_A0256at 318.006 kb on - strand, within Rru_A0256at 318.006 kb on - strand, within Rru_A0256at 318.006 kb on - strand, within Rru_A0256at 318.006 kb on - strand, within Rru_A0256at 318.207 kb on + strandat 318.208 kb on - strandat 318.243 kb on + strandat 318.244 kb on - strandat 318.277 kb on + strandat 318.278 kb on - strandat 318.278 kb on - strandat 318.404 kb on - strandat 318.490 kb on + strand, within Rru_A0257at 318.490 kb on + strand, within Rru_A0257at 318.490 kb on + strand, within Rru_A0257at 318.554 kb on + strand, within Rru_A0257at 318.595 kb on + strand, within Rru_A0257at 318.596 kb on - strand, within Rru_A0257at 318.596 kb on - strand, within Rru_A0257at 318.649 kb on + strand, within Rru_A0257at 318.649 kb on + strand, within Rru_A0257at 318.649 kb on + strand, within Rru_A0257at 318.649 kb on + strand, within Rru_A0257at 318.650 kb on - strand, within Rru_A0257at 318.907 kb on + strand, within Rru_A0257at 318.907 kb on + strand, within Rru_A0257at 318.908 kb on - strand, within Rru_A0257at 318.908 kb on - strand, within Rru_A0257at 319.090 kb on + strand, within Rru_A0257at 319.091 kb on - strand, within Rru_A0257

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic Acid (C) and N2; anaerobic; high light
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316,762 + Rru_A0254 0.83 -0.4
316,813 - Rru_A0254 0.88 +0.5
316,813 - Rru_A0254 0.88 -0.1
316,813 - Rru_A0254 0.88 -0.0
316,891 + +1.1
316,891 + -0.2
316,891 + +0.5
316,891 + -0.7
316,891 + +0.3
316,892 - +0.5
316,892 - +0.3
316,930 + -0.8
317,306 - Rru_A0255 0.33 +0.6
317,306 - Rru_A0255 0.33 +0.5
317,793 + Rru_A0256 0.11 +0.7
317,793 + Rru_A0256 0.11 +0.3
317,793 + Rru_A0256 0.11 +0.5
317,794 - Rru_A0256 0.11 -1.1
317,794 - Rru_A0256 0.11 -0.5
318,003 + Rru_A0256 0.52 -1.2
318,003 + Rru_A0256 0.52 -1.2
318,003 + Rru_A0256 0.52 +0.5
318,003 + Rru_A0256 0.52 -0.1
318,003 + Rru_A0256 0.52 +0.2
318,004 - Rru_A0256 0.52 -2.6
318,004 - Rru_A0256 0.52 -0.7
318,004 - Rru_A0256 0.52 +0.4
318,004 - Rru_A0256 0.52 +0.2
318,004 - Rru_A0256 0.52 +0.2
318,005 + Rru_A0256 0.52 -0.8
318,005 + Rru_A0256 0.52 -0.8
318,006 - Rru_A0256 0.53 -0.4
318,006 - Rru_A0256 0.53 -0.7
318,006 - Rru_A0256 0.53 +0.9
318,006 - Rru_A0256 0.53 -0.4
318,207 + -1.4
318,208 - -0.2
318,243 + -0.3
318,244 - +2.5
318,277 + +0.5
318,278 - -1.6
318,278 - -1.7
318,404 - -0.1
318,490 + Rru_A0257 0.16 -0.3
318,490 + Rru_A0257 0.16 -0.9
318,490 + Rru_A0257 0.16 -0.1
318,554 + Rru_A0257 0.22 +0.4
318,595 + Rru_A0257 0.26 -0.3
318,596 - Rru_A0257 0.26 -0.4
318,596 - Rru_A0257 0.26 -0.3
318,649 + Rru_A0257 0.31 +0.3
318,649 + Rru_A0257 0.31 -0.7
318,649 + Rru_A0257 0.31 +0.1
318,649 + Rru_A0257 0.31 -0.0
318,650 - Rru_A0257 0.31 +0.6
318,907 + Rru_A0257 0.55 -0.0
318,907 + Rru_A0257 0.55 +0.3
318,908 - Rru_A0257 0.55 -1.3
318,908 - Rru_A0257 0.55 -0.3
319,090 + Rru_A0257 0.72 -0.4
319,091 - Rru_A0257 0.72 +0.1

Or see this region's nucleotide sequence