Experiment: Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=Xylem_sap; GrowthSubstrate=calcine_clay; Collection=direct; 1 dpi
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RALBFv3_RS18380 and RALBFv3_RS18385 are separated by 308 nucleotides RALBFv3_RS18385 and RALBFv3_RS18390 are separated by 281 nucleotides
RALBFv3_RS18380: RALBFv3_RS18380 - MexE family multidrug efflux RND transporter periplasmic adaptor subunit, at 648,777 to 650,102
_RS18380
RALBFv3_RS18385: RALBFv3_RS18385 - alpha/beta hydrolase, at 650,411 to 651,493
_RS18385
RALBFv3_RS18390: RALBFv3_RS18390 - LysR family transcriptional regulator, at 651,775 to 652,719
_RS18390
Position (kb) 650
651
652 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 649.417 kb on + strand, within RALBFv3_RS18380 at 649.418 kb on - strand, within RALBFv3_RS18380 at 649.418 kb on - strand, within RALBFv3_RS18380 at 649.570 kb on + strand, within RALBFv3_RS18380 at 649.571 kb on - strand, within RALBFv3_RS18380 at 650.032 kb on + strand at 650.279 kb on + strand at 650.279 kb on + strand at 650.279 kb on + strand at 650.280 kb on - strand at 650.280 kb on - strand at 650.280 kb on - strand at 650.628 kb on + strand, within RALBFv3_RS18385 at 650.757 kb on + strand, within RALBFv3_RS18385 at 650.758 kb on - strand, within RALBFv3_RS18385 at 651.166 kb on - strand, within RALBFv3_RS18385 at 651.166 kb on - strand, within RALBFv3_RS18385 at 651.166 kb on - strand, within RALBFv3_RS18385 at 651.166 kb on - strand, within RALBFv3_RS18385 at 651.253 kb on - strand, within RALBFv3_RS18385 at 651.510 kb on + strand at 651.510 kb on + strand at 651.556 kb on + strand at 651.580 kb on + strand at 651.594 kb on + strand at 651.594 kb on + strand at 651.594 kb on + strand at 651.693 kb on + strand at 651.694 kb on - strand at 651.694 kb on - strand at 651.858 kb on - strand at 651.967 kb on + strand, within RALBFv3_RS18390 at 651.970 kb on + strand, within RALBFv3_RS18390 at 651.970 kb on + strand, within RALBFv3_RS18390 at 651.970 kb on + strand, within RALBFv3_RS18390 at 652.127 kb on - strand, within RALBFv3_RS18390 at 652.127 kb on - strand, within RALBFv3_RS18390 at 652.285 kb on + strand, within RALBFv3_RS18390 at 652.348 kb on + strand, within RALBFv3_RS18390 at 652.348 kb on + strand, within RALBFv3_RS18390 at 652.348 kb on + strand, within RALBFv3_RS18390
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=Xylem_sap; GrowthSubstrate=calcine_clay; Collection=direct; 1 dpi remove 649,417 + RALBFv3_RS18380 0.48 -0.2 649,418 - RALBFv3_RS18380 0.48 -0.4 649,418 - RALBFv3_RS18380 0.48 -1.1 649,570 + RALBFv3_RS18380 0.60 -2.8 649,571 - RALBFv3_RS18380 0.60 -0.4 650,032 + -0.3 650,279 + -1.9 650,279 + +0.2 650,279 + -0.1 650,280 - -0.6 650,280 - +0.1 650,280 - +0.2 650,628 + RALBFv3_RS18385 0.20 -0.4 650,757 + RALBFv3_RS18385 0.32 -1.1 650,758 - RALBFv3_RS18385 0.32 -1.1 651,166 - RALBFv3_RS18385 0.70 -0.9 651,166 - RALBFv3_RS18385 0.70 -0.6 651,166 - RALBFv3_RS18385 0.70 -1.0 651,166 - RALBFv3_RS18385 0.70 -0.2 651,253 - RALBFv3_RS18385 0.78 +0.8 651,510 + +0.6 651,510 + +0.8 651,556 + +2.4 651,580 + +1.1 651,594 + -0.2 651,594 + +0.8 651,594 + +0.9 651,693 + +0.5 651,694 - +0.1 651,694 - -0.1 651,858 - -0.8 651,967 + RALBFv3_RS18390 0.20 +0.0 651,970 + RALBFv3_RS18390 0.21 -0.1 651,970 + RALBFv3_RS18390 0.21 +0.0 651,970 + RALBFv3_RS18390 0.21 -1.7 652,127 - RALBFv3_RS18390 0.37 +0.4 652,127 - RALBFv3_RS18390 0.37 -0.4 652,285 + RALBFv3_RS18390 0.54 -0.2 652,348 + RALBFv3_RS18390 0.61 -0.1 652,348 + RALBFv3_RS18390 0.61 +0.0 652,348 + RALBFv3_RS18390 0.61 -0.3
Or see this region's nucleotide sequence