Experiment: Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=Xylem_sap; GrowthSubstrate=calcine_clay; Collection=direct; 1 dpi
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RALBFv3_RS17915 and RALBFv3_RS17920 are separated by 153 nucleotides RALBFv3_RS17920 and RALBFv3_RS17925 are separated by 101 nucleotides RALBFv3_RS17925 and RALBFv3_RS17930 are separated by 3 nucleotides
RALBFv3_RS17915: RALBFv3_RS17915 - type III effector protein, at 523,960 to 526,056
_RS17915
RALBFv3_RS17920: RALBFv3_RS17920 - LysR family transcriptional regulator, at 526,210 to 527,142
_RS17920
RALBFv3_RS17925: RALBFv3_RS17925 - diguanylate cyclase, at 527,244 to 527,909
_RS17925
RALBFv3_RS17930: RALBFv3_RS17930 - diguanylate cyclase, at 527,913 to 528,578
_RS17930
Position (kb) 526
527
528 Strain fitness (log2 ratio) -1
0
1 at 525.234 kb on + strand, within RALBFv3_RS17915 at 525.234 kb on + strand, within RALBFv3_RS17915 at 525.235 kb on - strand, within RALBFv3_RS17915 at 525.236 kb on + strand, within RALBFv3_RS17915 at 525.236 kb on + strand, within RALBFv3_RS17915 at 525.237 kb on - strand, within RALBFv3_RS17915 at 525.253 kb on + strand, within RALBFv3_RS17915 at 525.254 kb on - strand, within RALBFv3_RS17915 at 525.267 kb on + strand, within RALBFv3_RS17915 at 525.268 kb on - strand, within RALBFv3_RS17915 at 525.577 kb on - strand, within RALBFv3_RS17915 at 525.851 kb on - strand at 527.151 kb on - strand at 527.151 kb on - strand at 527.151 kb on - strand at 527.152 kb on + strand at 527.163 kb on + strand at 527.196 kb on + strand at 527.625 kb on + strand, within RALBFv3_RS17925 at 527.625 kb on + strand, within RALBFv3_RS17925 at 527.625 kb on + strand, within RALBFv3_RS17925 at 527.626 kb on - strand, within RALBFv3_RS17925 at 527.626 kb on - strand, within RALBFv3_RS17925 at 527.648 kb on - strand, within RALBFv3_RS17925 at 527.727 kb on + strand, within RALBFv3_RS17925 at 527.727 kb on + strand, within RALBFv3_RS17925 at 527.728 kb on - strand, within RALBFv3_RS17925 at 527.728 kb on - strand, within RALBFv3_RS17925 at 527.728 kb on - strand, within RALBFv3_RS17925 at 528.037 kb on - strand, within RALBFv3_RS17930 at 528.075 kb on + strand, within RALBFv3_RS17930 at 528.075 kb on + strand, within RALBFv3_RS17930 at 528.076 kb on - strand, within RALBFv3_RS17930 at 528.076 kb on - strand, within RALBFv3_RS17930 at 528.076 kb on - strand, within RALBFv3_RS17930
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=Xylem_sap; GrowthSubstrate=calcine_clay; Collection=direct; 1 dpi remove 525,234 + RALBFv3_RS17915 0.61 +1.5 525,234 + RALBFv3_RS17915 0.61 +0.1 525,235 - RALBFv3_RS17915 0.61 +0.1 525,236 + RALBFv3_RS17915 0.61 +1.0 525,236 + RALBFv3_RS17915 0.61 -0.6 525,237 - RALBFv3_RS17915 0.61 -0.5 525,253 + RALBFv3_RS17915 0.62 -0.1 525,254 - RALBFv3_RS17915 0.62 -0.4 525,267 + RALBFv3_RS17915 0.62 -0.1 525,268 - RALBFv3_RS17915 0.62 +0.0 525,577 - RALBFv3_RS17915 0.77 +0.5 525,851 - -1.3 527,151 - -1.1 527,151 - -0.4 527,151 - +1.1 527,152 + -0.8 527,163 + -0.1 527,196 + -0.2 527,625 + RALBFv3_RS17925 0.57 -0.4 527,625 + RALBFv3_RS17925 0.57 +0.5 527,625 + RALBFv3_RS17925 0.57 +0.5 527,626 - RALBFv3_RS17925 0.57 -1.5 527,626 - RALBFv3_RS17925 0.57 +0.3 527,648 - RALBFv3_RS17925 0.61 +0.3 527,727 + RALBFv3_RS17925 0.73 -0.2 527,727 + RALBFv3_RS17925 0.73 -0.0 527,728 - RALBFv3_RS17925 0.73 -0.4 527,728 - RALBFv3_RS17925 0.73 -0.1 527,728 - RALBFv3_RS17925 0.73 -1.3 528,037 - RALBFv3_RS17930 0.19 +0.1 528,075 + RALBFv3_RS17930 0.24 +0.2 528,075 + RALBFv3_RS17930 0.24 -0.2 528,076 - RALBFv3_RS17930 0.24 +0.5 528,076 - RALBFv3_RS17930 0.24 +1.2 528,076 - RALBFv3_RS17930 0.24 -0.1
Or see this region's nucleotide sequence