Strain Fitness in Ralstonia solanacearum IBSBF1503 around RALBFv3_RS14485

Experiment: Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=Xylem_sap; GrowthSubstrate=calcine_clay; Collection=direct; 1 dpi

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRALBFv3_RS14475 and RALBFv3_RS14480 are separated by 65 nucleotidesRALBFv3_RS14480 and RALBFv3_RS14485 are separated by 1 nucleotidesRALBFv3_RS14485 and RALBFv3_RS14490 overlap by 4 nucleotidesRALBFv3_RS14490 and RALBFv3_RS14495 are separated by 21 nucleotides RALBFv3_RS14475: RALBFv3_RS14475 - signal peptidase I, at 3,162,964 to 3,163,857 _RS14475 RALBFv3_RS14480: RALBFv3_RS14480 - DUF4845 domain-containing protein, at 3,163,923 to 3,164,291 _RS14480 RALBFv3_RS14485: RALBFv3_RS14485 - ribonuclease III, at 3,164,293 to 3,165,063 _RS14485 RALBFv3_RS14490: RALBFv3_RS14490 - GTPase Era, at 3,165,060 to 3,166,007 _RS14490 RALBFv3_RS14495: RALBFv3_RS14495 - DNA repair protein RecO, at 3,166,029 to 3,166,847 _RS14495 Position (kb) 3164 3165 3166Strain fitness (log2 ratio) -1 0 1at 3164.005 kb on + strand, within RALBFv3_RS14480at 3164.212 kb on + strand, within RALBFv3_RS14480at 3165.994 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=Xylem_sap; GrowthSubstrate=calcine_clay; Collection=direct; 1 dpi
remove
3,164,005 + RALBFv3_RS14480 0.22 +0.3
3,164,212 + RALBFv3_RS14480 0.78 -0.7
3,165,994 - -0.4

Or see this region's nucleotide sequence