Experiment: Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=Xylem_sap; GrowthSubstrate=calcine_clay; Collection=direct; 1 dpi
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RALBFv3_RS05355 and RALBFv3_RS05360 are separated by 13 nucleotides RALBFv3_RS05360 and RALBFv3_RS23700 are separated by 32 nucleotides RALBFv3_RS23700 and RALBFv3_RS05365 are separated by 47 nucleotides RALBFv3_RS05365 and RALBFv3_RS05370 are separated by 13 nucleotides RALBFv3_RS05370 and RALBFv3_RS05375 overlap by 4 nucleotides
RALBFv3_RS05355: RALBFv3_RS05355 - thioredoxin, at 1,181,704 to 1,182,126
_RS05355
RALBFv3_RS05360: RALBFv3_RS05360 - nucleotide exchange factor GrpE, at 1,182,140 to 1,182,784
_RS05360
RALBFv3_RS23700: RALBFv3_RS23700 - hypothetical protein, at 1,182,817 to 1,183,020
_RS23700
RALBFv3_RS05365: RALBFv3_RS05365 - hypothetical protein, at 1,183,068 to 1,183,256
_RS05365
RALBFv3_RS05370: RALBFv3_RS05370 - RNA-binding S4 domain-containing protein, at 1,183,270 to 1,183,665
_RS05370
RALBFv3_RS05375: RALBFv3_RS05375 - ferrochelatase, at 1,183,662 to 1,184,777
_RS05375
Position (kb) 1183
1184 Strain fitness (log2 ratio) -2
-1
0
1 at 1182.141 kb on + strand at 1182.141 kb on + strand at 1182.142 kb on - strand at 1182.795 kb on - strand at 1182.795 kb on - strand at 1182.952 kb on + strand, within RALBFv3_RS23700 at 1182.952 kb on + strand, within RALBFv3_RS23700 at 1183.016 kb on + strand at 1183.016 kb on + strand at 1183.016 kb on + strand at 1183.016 kb on + strand at 1183.016 kb on + strand at 1183.016 kb on + strand at 1183.017 kb on - strand at 1183.017 kb on - strand at 1183.017 kb on - strand at 1183.017 kb on - strand at 1183.064 kb on + strand at 1183.064 kb on + strand at 1183.065 kb on - strand at 1183.065 kb on - strand at 1183.093 kb on + strand, within RALBFv3_RS05365 at 1183.170 kb on + strand, within RALBFv3_RS05365 at 1183.200 kb on + strand, within RALBFv3_RS05365 at 1183.200 kb on + strand, within RALBFv3_RS05365 at 1183.200 kb on + strand, within RALBFv3_RS05365 at 1183.200 kb on + strand, within RALBFv3_RS05365 at 1183.200 kb on + strand, within RALBFv3_RS05365 at 1183.200 kb on + strand, within RALBFv3_RS05365 at 1183.200 kb on + strand, within RALBFv3_RS05365 at 1183.201 kb on - strand, within RALBFv3_RS05365 at 1183.201 kb on - strand, within RALBFv3_RS05365 at 1183.205 kb on + strand, within RALBFv3_RS05365 at 1183.206 kb on - strand, within RALBFv3_RS05365 at 1183.206 kb on - strand, within RALBFv3_RS05365 at 1183.206 kb on - strand, within RALBFv3_RS05365 at 1183.254 kb on + strand at 1183.255 kb on - strand at 1183.265 kb on + strand at 1183.265 kb on + strand at 1183.266 kb on - strand at 1183.266 kb on - strand at 1183.266 kb on - strand at 1183.381 kb on + strand, within RALBFv3_RS05370 at 1183.381 kb on + strand, within RALBFv3_RS05370
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=Xylem_sap; GrowthSubstrate=calcine_clay; Collection=direct; 1 dpi remove 1,182,141 + -0.7 1,182,141 + +0.2 1,182,142 - +0.5 1,182,795 - -0.4 1,182,795 - +0.2 1,182,952 + RALBFv3_RS23700 0.66 +0.0 1,182,952 + RALBFv3_RS23700 0.66 +0.0 1,183,016 + -0.4 1,183,016 + -2.1 1,183,016 + -0.3 1,183,016 + +0.2 1,183,016 + -0.0 1,183,016 + -0.3 1,183,017 - +0.4 1,183,017 - +0.4 1,183,017 - +0.1 1,183,017 - +1.1 1,183,064 + +0.2 1,183,064 + -0.8 1,183,065 - +0.5 1,183,065 - -1.0 1,183,093 + RALBFv3_RS05365 0.13 -0.1 1,183,170 + RALBFv3_RS05365 0.54 +0.1 1,183,200 + RALBFv3_RS05365 0.70 -0.3 1,183,200 + RALBFv3_RS05365 0.70 -0.1 1,183,200 + RALBFv3_RS05365 0.70 -0.6 1,183,200 + RALBFv3_RS05365 0.70 +0.0 1,183,200 + RALBFv3_RS05365 0.70 +0.1 1,183,200 + RALBFv3_RS05365 0.70 -0.1 1,183,200 + RALBFv3_RS05365 0.70 -0.4 1,183,201 - RALBFv3_RS05365 0.70 +0.4 1,183,201 - RALBFv3_RS05365 0.70 +0.6 1,183,205 + RALBFv3_RS05365 0.72 -0.0 1,183,206 - RALBFv3_RS05365 0.73 +0.2 1,183,206 - RALBFv3_RS05365 0.73 +0.3 1,183,206 - RALBFv3_RS05365 0.73 -1.0 1,183,254 + -1.8 1,183,255 - +0.6 1,183,265 + +0.1 1,183,265 + -0.1 1,183,266 - -0.2 1,183,266 - -0.3 1,183,266 - +0.4 1,183,381 + RALBFv3_RS05370 0.28 +0.2 1,183,381 + RALBFv3_RS05370 0.28 +0.5
Or see this region's nucleotide sequence