Experiment: Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=Xylem_sap; GrowthSubstrate=calcine_clay; Collection=direct; 1 dpi
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RALBFv3_RS04880 and RALBFv3_RS04885 are separated by 23 nucleotides RALBFv3_RS04885 and RALBFv3_RS04890 are separated by 57 nucleotides
RALBFv3_RS04880: RALBFv3_RS04880 - MBL fold metallo-hydrolase, at 1,090,908 to 1,091,873
_RS04880
RALBFv3_RS04885: RALBFv3_RS04885 - hypothetical protein, at 1,091,897 to 1,092,358
_RS04885
RALBFv3_RS04890: RALBFv3_RS04890 - LysR family transcriptional regulator, at 1,092,416 to 1,093,381
_RS04890
Position (kb) 1091
1092
1093 Strain fitness (log2 ratio) -1
0
1 at 1091.127 kb on + strand, within RALBFv3_RS04880 at 1091.128 kb on - strand, within RALBFv3_RS04880 at 1091.163 kb on + strand, within RALBFv3_RS04880 at 1091.164 kb on - strand, within RALBFv3_RS04880 at 1091.241 kb on + strand, within RALBFv3_RS04880 at 1091.242 kb on - strand, within RALBFv3_RS04880 at 1091.294 kb on + strand, within RALBFv3_RS04880 at 1091.346 kb on + strand, within RALBFv3_RS04880 at 1091.346 kb on + strand, within RALBFv3_RS04880 at 1091.347 kb on - strand, within RALBFv3_RS04880 at 1091.352 kb on + strand, within RALBFv3_RS04880 at 1091.352 kb on + strand, within RALBFv3_RS04880 at 1091.994 kb on + strand, within RALBFv3_RS04885 at 1092.010 kb on - strand, within RALBFv3_RS04885 at 1092.010 kb on - strand, within RALBFv3_RS04885 at 1092.102 kb on + strand, within RALBFv3_RS04885 at 1092.102 kb on + strand, within RALBFv3_RS04885 at 1092.102 kb on + strand, within RALBFv3_RS04885 at 1092.103 kb on - strand, within RALBFv3_RS04885 at 1092.103 kb on - strand, within RALBFv3_RS04885 at 1092.103 kb on - strand, within RALBFv3_RS04885 at 1092.103 kb on - strand, within RALBFv3_RS04885 at 1092.103 kb on - strand, within RALBFv3_RS04885 at 1092.138 kb on + strand, within RALBFv3_RS04885 at 1092.139 kb on - strand, within RALBFv3_RS04885 at 1092.143 kb on + strand, within RALBFv3_RS04885 at 1092.143 kb on + strand, within RALBFv3_RS04885 at 1092.144 kb on - strand, within RALBFv3_RS04885 at 1092.144 kb on - strand, within RALBFv3_RS04885 at 1092.144 kb on - strand, within RALBFv3_RS04885 at 1092.178 kb on - strand, within RALBFv3_RS04885 at 1092.394 kb on - strand at 1092.418 kb on - strand at 1092.418 kb on - strand at 1092.708 kb on + strand, within RALBFv3_RS04890 at 1092.708 kb on + strand, within RALBFv3_RS04890 at 1092.997 kb on + strand, within RALBFv3_RS04890 at 1093.167 kb on + strand, within RALBFv3_RS04890 at 1093.168 kb on - strand, within RALBFv3_RS04890
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=Xylem_sap; GrowthSubstrate=calcine_clay; Collection=direct; 1 dpi remove 1,091,127 + RALBFv3_RS04880 0.23 +0.1 1,091,128 - RALBFv3_RS04880 0.23 +0.1 1,091,163 + RALBFv3_RS04880 0.26 -0.1 1,091,164 - RALBFv3_RS04880 0.27 +0.6 1,091,241 + RALBFv3_RS04880 0.34 -1.1 1,091,242 - RALBFv3_RS04880 0.35 +0.2 1,091,294 + RALBFv3_RS04880 0.40 +0.4 1,091,346 + RALBFv3_RS04880 0.45 -0.3 1,091,346 + RALBFv3_RS04880 0.45 +1.3 1,091,347 - RALBFv3_RS04880 0.45 +1.1 1,091,352 + RALBFv3_RS04880 0.46 -0.6 1,091,352 + RALBFv3_RS04880 0.46 +1.4 1,091,994 + RALBFv3_RS04885 0.21 +0.7 1,092,010 - RALBFv3_RS04885 0.24 +0.3 1,092,010 - RALBFv3_RS04885 0.24 +0.5 1,092,102 + RALBFv3_RS04885 0.44 -0.1 1,092,102 + RALBFv3_RS04885 0.44 +0.1 1,092,102 + RALBFv3_RS04885 0.44 -0.8 1,092,103 - RALBFv3_RS04885 0.45 -0.0 1,092,103 - RALBFv3_RS04885 0.45 +0.0 1,092,103 - RALBFv3_RS04885 0.45 +1.1 1,092,103 - RALBFv3_RS04885 0.45 -0.5 1,092,103 - RALBFv3_RS04885 0.45 +0.2 1,092,138 + RALBFv3_RS04885 0.52 -0.6 1,092,139 - RALBFv3_RS04885 0.52 -0.1 1,092,143 + RALBFv3_RS04885 0.53 +0.1 1,092,143 + RALBFv3_RS04885 0.53 +0.4 1,092,144 - RALBFv3_RS04885 0.53 -0.0 1,092,144 - RALBFv3_RS04885 0.53 -0.8 1,092,144 - RALBFv3_RS04885 0.53 +0.7 1,092,178 - RALBFv3_RS04885 0.61 -0.6 1,092,394 - +0.1 1,092,418 - -0.1 1,092,418 - -0.0 1,092,708 + RALBFv3_RS04890 0.30 +1.0 1,092,708 + RALBFv3_RS04890 0.30 +0.4 1,092,997 + RALBFv3_RS04890 0.60 +0.9 1,093,167 + RALBFv3_RS04890 0.78 +0.2 1,093,168 - RALBFv3_RS04890 0.78 -0.3
Or see this region's nucleotide sequence