Experiment: Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=Xylem_sap; GrowthSubstrate=calcine_clay; Collection=direct; 1 dpi
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RALBFv3_RS03950 and RALBFv3_RS03955 overlap by 58 nucleotides RALBFv3_RS03955 and RALBFv3_RS03960 overlap by 98 nucleotides RALBFv3_RS03960 and RALBFv3_RS03965 are separated by 140 nucleotides RALBFv3_RS03965 and RALBFv3_RS03970 are separated by 426 nucleotides
RALBFv3_RS03950: RALBFv3_RS03950 - HlyC/CorC family transporter, at 876,175 to 877,488
_RS03950
RALBFv3_RS03955: RALBFv3_RS03955 - carboxymuconolactone decarboxylase, at 877,431 to 877,898
_RS03955
RALBFv3_RS03960: RALBFv3_RS03960 - MerR family transcriptional regulator, at 877,801 to 878,331
_RS03960
RALBFv3_RS03965: RALBFv3_RS03965 - hypothetical protein, at 878,472 to 878,699
_RS03965
RALBFv3_RS03970: RALBFv3_RS03970 - hypothetical protein, at 879,126 to 879,401
_RS03970
Position (kb) 877
878
879 Strain fitness (log2 ratio) -2
-1
0
1 at 876.838 kb on + strand, within RALBFv3_RS03950 at 876.905 kb on - strand, within RALBFv3_RS03950 at 876.905 kb on - strand, within RALBFv3_RS03950 at 876.905 kb on - strand, within RALBFv3_RS03950 at 877.022 kb on - strand, within RALBFv3_RS03950 at 877.189 kb on + strand, within RALBFv3_RS03950 at 877.189 kb on + strand, within RALBFv3_RS03950 at 877.190 kb on - strand, within RALBFv3_RS03950 at 877.339 kb on + strand, within RALBFv3_RS03950 at 877.340 kb on - strand, within RALBFv3_RS03950 at 877.546 kb on + strand, within RALBFv3_RS03955 at 877.546 kb on + strand, within RALBFv3_RS03955 at 877.546 kb on + strand, within RALBFv3_RS03955 at 877.546 kb on + strand, within RALBFv3_RS03955 at 877.710 kb on + strand, within RALBFv3_RS03955 at 877.711 kb on + strand, within RALBFv3_RS03955 at 877.712 kb on - strand, within RALBFv3_RS03955 at 877.712 kb on - strand, within RALBFv3_RS03955 at 877.712 kb on - strand, within RALBFv3_RS03955 at 877.739 kb on + strand, within RALBFv3_RS03955 at 877.740 kb on - strand, within RALBFv3_RS03955 at 877.741 kb on + strand, within RALBFv3_RS03955 at 877.742 kb on - strand, within RALBFv3_RS03955 at 877.742 kb on - strand, within RALBFv3_RS03955 at 877.837 kb on + strand at 877.980 kb on - strand, within RALBFv3_RS03960 at 877.980 kb on - strand, within RALBFv3_RS03960 at 878.262 kb on - strand, within RALBFv3_RS03960 at 878.262 kb on - strand, within RALBFv3_RS03960 at 878.264 kb on + strand, within RALBFv3_RS03960 at 878.265 kb on - strand, within RALBFv3_RS03960 at 878.342 kb on + strand at 878.343 kb on - strand at 878.488 kb on + strand at 878.703 kb on - strand at 878.994 kb on - strand at 878.994 kb on - strand at 878.994 kb on - strand at 879.088 kb on + strand at 879.088 kb on + strand at 879.089 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=Xylem_sap; GrowthSubstrate=calcine_clay; Collection=direct; 1 dpi remove 876,838 + RALBFv3_RS03950 0.50 +0.0 876,905 - RALBFv3_RS03950 0.56 -1.2 876,905 - RALBFv3_RS03950 0.56 -0.4 876,905 - RALBFv3_RS03950 0.56 -0.3 877,022 - RALBFv3_RS03950 0.64 -0.2 877,189 + RALBFv3_RS03950 0.77 -0.1 877,189 + RALBFv3_RS03950 0.77 -0.5 877,190 - RALBFv3_RS03950 0.77 +0.5 877,339 + RALBFv3_RS03950 0.89 +0.1 877,340 - RALBFv3_RS03950 0.89 -0.6 877,546 + RALBFv3_RS03955 0.25 -0.4 877,546 + RALBFv3_RS03955 0.25 +0.3 877,546 + RALBFv3_RS03955 0.25 +0.7 877,546 + RALBFv3_RS03955 0.25 -0.2 877,710 + RALBFv3_RS03955 0.60 -0.5 877,711 + RALBFv3_RS03955 0.60 +0.0 877,712 - RALBFv3_RS03955 0.60 +0.4 877,712 - RALBFv3_RS03955 0.60 +0.2 877,712 - RALBFv3_RS03955 0.60 +0.5 877,739 + RALBFv3_RS03955 0.66 +0.1 877,740 - RALBFv3_RS03955 0.66 +1.5 877,741 + RALBFv3_RS03955 0.66 -0.5 877,742 - RALBFv3_RS03955 0.66 -0.1 877,742 - RALBFv3_RS03955 0.66 -0.4 877,837 + -0.3 877,980 - RALBFv3_RS03960 0.34 +0.3 877,980 - RALBFv3_RS03960 0.34 -0.2 878,262 - RALBFv3_RS03960 0.87 -0.7 878,262 - RALBFv3_RS03960 0.87 -0.7 878,264 + RALBFv3_RS03960 0.87 +0.2 878,265 - RALBFv3_RS03960 0.87 +0.5 878,342 + +0.7 878,343 - -0.6 878,488 + +1.0 878,703 - +0.7 878,994 - -2.0 878,994 - -0.4 878,994 - -0.1 879,088 + +0.1 879,088 + +0.3 879,089 - +0.3
Or see this region's nucleotide sequence