Strain Fitness in Ralstonia solanacearum IBSBF1503 around RALBFv3_RS03940

Experiment: Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=Xylem_sap; GrowthSubstrate=calcine_clay; Collection=direct; 1 dpi

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRALBFv3_RS03930 and RALBFv3_RS03935 overlap by 1 nucleotidesRALBFv3_RS03935 and RALBFv3_RS03940 are separated by 45 nucleotidesRALBFv3_RS03940 and RALBFv3_RS03945 overlap by 14 nucleotides RALBFv3_RS03930: RALBFv3_RS03930 - sugar ABC transporter, at 866,896 to 868,347 _RS03930 RALBFv3_RS03935: RALBFv3_RS03935 - hypothetical protein, at 868,347 to 868,907 _RS03935 RALBFv3_RS03940: RALBFv3_RS03940 - signal peptidase, at 868,953 to 872,912 _RS03940 RALBFv3_RS03945: RALBFv3_RS03945 - hypothetical protein, at 872,899 to 875,748 _RS03945 Position (kb) 868 869 870 871 872 873Strain fitness (log2 ratio) -2 -1 0 1 2at 867.968 kb on + strand, within RALBFv3_RS03930at 867.968 kb on + strand, within RALBFv3_RS03930at 867.968 kb on + strand, within RALBFv3_RS03930at 867.968 kb on + strand, within RALBFv3_RS03930at 867.969 kb on - strand, within RALBFv3_RS03930at 867.996 kb on - strand, within RALBFv3_RS03930at 867.996 kb on - strand, within RALBFv3_RS03930at 868.525 kb on + strand, within RALBFv3_RS03935at 868.526 kb on - strand, within RALBFv3_RS03935at 868.741 kb on + strand, within RALBFv3_RS03935at 868.741 kb on + strand, within RALBFv3_RS03935at 868.741 kb on + strand, within RALBFv3_RS03935at 868.742 kb on - strand, within RALBFv3_RS03935at 868.958 kb on - strandat 869.032 kb on + strandat 869.032 kb on + strandat 869.033 kb on - strandat 869.033 kb on - strandat 869.033 kb on - strandat 869.155 kb on + strandat 869.156 kb on - strandat 869.198 kb on - strandat 869.305 kb on + strandat 869.305 kb on + strandat 869.306 kb on - strandat 869.326 kb on + strandat 869.327 kb on + strandat 869.327 kb on + strandat 869.328 kb on - strandat 869.329 kb on + strandat 869.339 kb on - strandat 869.412 kb on + strand, within RALBFv3_RS03940at 869.413 kb on + strand, within RALBFv3_RS03940at 869.447 kb on - strand, within RALBFv3_RS03940at 869.447 kb on - strand, within RALBFv3_RS03940at 869.447 kb on - strand, within RALBFv3_RS03940at 869.447 kb on - strand, within RALBFv3_RS03940at 869.776 kb on + strand, within RALBFv3_RS03940at 869.776 kb on + strand, within RALBFv3_RS03940at 869.777 kb on - strand, within RALBFv3_RS03940at 869.840 kb on + strand, within RALBFv3_RS03940at 869.840 kb on + strand, within RALBFv3_RS03940at 869.840 kb on + strand, within RALBFv3_RS03940at 869.840 kb on + strand, within RALBFv3_RS03940at 869.841 kb on - strand, within RALBFv3_RS03940at 869.841 kb on - strand, within RALBFv3_RS03940at 869.842 kb on + strand, within RALBFv3_RS03940at 870.118 kb on + strand, within RALBFv3_RS03940at 870.119 kb on - strand, within RALBFv3_RS03940at 870.119 kb on - strand, within RALBFv3_RS03940at 870.498 kb on + strand, within RALBFv3_RS03940at 870.499 kb on - strand, within RALBFv3_RS03940at 870.571 kb on + strand, within RALBFv3_RS03940at 870.571 kb on + strand, within RALBFv3_RS03940at 870.572 kb on - strand, within RALBFv3_RS03940at 870.980 kb on - strand, within RALBFv3_RS03940at 870.983 kb on - strand, within RALBFv3_RS03940at 870.983 kb on - strand, within RALBFv3_RS03940at 870.985 kb on + strand, within RALBFv3_RS03940at 870.985 kb on + strand, within RALBFv3_RS03940at 870.985 kb on + strand, within RALBFv3_RS03940at 870.985 kb on + strand, within RALBFv3_RS03940at 870.987 kb on - strand, within RALBFv3_RS03940at 871.072 kb on + strand, within RALBFv3_RS03940at 871.072 kb on + strand, within RALBFv3_RS03940at 871.135 kb on + strand, within RALBFv3_RS03940at 871.136 kb on - strand, within RALBFv3_RS03940at 871.198 kb on + strand, within RALBFv3_RS03940at 871.198 kb on + strand, within RALBFv3_RS03940at 871.276 kb on + strand, within RALBFv3_RS03940at 871.393 kb on + strand, within RALBFv3_RS03940at 871.444 kb on + strand, within RALBFv3_RS03940at 871.555 kb on + strand, within RALBFv3_RS03940at 871.556 kb on - strand, within RALBFv3_RS03940at 871.634 kb on - strand, within RALBFv3_RS03940at 871.634 kb on - strand, within RALBFv3_RS03940at 871.999 kb on - strand, within RALBFv3_RS03940at 872.019 kb on - strand, within RALBFv3_RS03940at 872.086 kb on + strand, within RALBFv3_RS03940at 872.317 kb on + strand, within RALBFv3_RS03940at 872.317 kb on + strand, within RALBFv3_RS03940at 872.482 kb on + strand, within RALBFv3_RS03940at 872.524 kb on + strandat 872.683 kb on + strandat 872.683 kb on + strandat 872.683 kb on + strandat 872.684 kb on - strandat 872.684 kb on - strandat 872.749 kb on + strandat 872.924 kb on + strandat 872.924 kb on + strandat 872.924 kb on + strandat 872.925 kb on - strandat 872.925 kb on - strandat 872.925 kb on - strandat 873.059 kb on + strandat 873.060 kb on - strandat 873.138 kb on - strandat 873.206 kb on + strand, within RALBFv3_RS03945at 873.206 kb on + strand, within RALBFv3_RS03945at 873.207 kb on - strand, within RALBFv3_RS03945at 873.207 kb on - strand, within RALBFv3_RS03945at 873.207 kb on - strand, within RALBFv3_RS03945at 873.377 kb on + strand, within RALBFv3_RS03945at 873.378 kb on - strand, within RALBFv3_RS03945at 873.389 kb on + strand, within RALBFv3_RS03945at 873.389 kb on + strand, within RALBFv3_RS03945at 873.390 kb on - strand, within RALBFv3_RS03945at 873.419 kb on + strand, within RALBFv3_RS03945at 873.420 kb on - strand, within RALBFv3_RS03945at 873.425 kb on + strand, within RALBFv3_RS03945at 873.470 kb on + strand, within RALBFv3_RS03945at 873.471 kb on - strand, within RALBFv3_RS03945at 873.471 kb on - strand, within RALBFv3_RS03945at 873.478 kb on + strand, within RALBFv3_RS03945at 873.479 kb on + strand, within RALBFv3_RS03945at 873.479 kb on + strand, within RALBFv3_RS03945at 873.479 kb on + strand, within RALBFv3_RS03945at 873.479 kb on + strand, within RALBFv3_RS03945at 873.480 kb on - strand, within RALBFv3_RS03945at 873.480 kb on - strand, within RALBFv3_RS03945at 873.480 kb on - strand, within RALBFv3_RS03945at 873.480 kb on - strand, within RALBFv3_RS03945at 873.480 kb on - strand, within RALBFv3_RS03945at 873.480 kb on - strand, within RALBFv3_RS03945at 873.554 kb on + strand, within RALBFv3_RS03945at 873.557 kb on + strand, within RALBFv3_RS03945at 873.557 kb on + strand, within RALBFv3_RS03945at 873.557 kb on + strand, within RALBFv3_RS03945at 873.557 kb on + strand, within RALBFv3_RS03945at 873.558 kb on - strand, within RALBFv3_RS03945at 873.580 kb on - strand, within RALBFv3_RS03945at 873.582 kb on - strand, within RALBFv3_RS03945at 873.820 kb on - strand, within RALBFv3_RS03945at 873.822 kb on - strand, within RALBFv3_RS03945at 873.822 kb on - strand, within RALBFv3_RS03945at 873.822 kb on - strand, within RALBFv3_RS03945

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=Xylem_sap; GrowthSubstrate=calcine_clay; Collection=direct; 1 dpi
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867,968 + RALBFv3_RS03930 0.74 +0.5
867,968 + RALBFv3_RS03930 0.74 +0.2
867,968 + RALBFv3_RS03930 0.74 +0.5
867,968 + RALBFv3_RS03930 0.74 +0.4
867,969 - RALBFv3_RS03930 0.74 +0.0
867,996 - RALBFv3_RS03930 0.76 +0.2
867,996 - RALBFv3_RS03930 0.76 +0.5
868,525 + RALBFv3_RS03935 0.32 +0.3
868,526 - RALBFv3_RS03935 0.32 +1.7
868,741 + RALBFv3_RS03935 0.70 +0.0
868,741 + RALBFv3_RS03935 0.70 +0.4
868,741 + RALBFv3_RS03935 0.70 +0.6
868,742 - RALBFv3_RS03935 0.70 +0.3
868,958 - +0.2
869,032 + -0.6
869,032 + +0.6
869,033 - -1.1
869,033 - +0.4
869,033 - +0.4
869,155 + +0.2
869,156 - +0.5
869,198 - +1.5
869,305 + +0.1
869,305 + +0.8
869,306 - +1.1
869,326 + -0.2
869,327 + +1.0
869,327 + +0.1
869,328 - -0.7
869,329 + +0.3
869,339 - +0.6
869,412 + RALBFv3_RS03940 0.12 +0.5
869,413 + RALBFv3_RS03940 0.12 -0.0
869,447 - RALBFv3_RS03940 0.12 -0.0
869,447 - RALBFv3_RS03940 0.12 +0.3
869,447 - RALBFv3_RS03940 0.12 +0.6
869,447 - RALBFv3_RS03940 0.12 +0.2
869,776 + RALBFv3_RS03940 0.21 +0.4
869,776 + RALBFv3_RS03940 0.21 -2.4
869,777 - RALBFv3_RS03940 0.21 +0.0
869,840 + RALBFv3_RS03940 0.22 +1.1
869,840 + RALBFv3_RS03940 0.22 +0.4
869,840 + RALBFv3_RS03940 0.22 +0.6
869,840 + RALBFv3_RS03940 0.22 -0.2
869,841 - RALBFv3_RS03940 0.22 +0.4
869,841 - RALBFv3_RS03940 0.22 +0.1
869,842 + RALBFv3_RS03940 0.22 +1.1
870,118 + RALBFv3_RS03940 0.29 +1.0
870,119 - RALBFv3_RS03940 0.29 +0.2
870,119 - RALBFv3_RS03940 0.29 +0.7
870,498 + RALBFv3_RS03940 0.39 +0.6
870,499 - RALBFv3_RS03940 0.39 +1.0
870,571 + RALBFv3_RS03940 0.41 -0.2
870,571 + RALBFv3_RS03940 0.41 -0.2
870,572 - RALBFv3_RS03940 0.41 -0.4
870,980 - RALBFv3_RS03940 0.51 +0.6
870,983 - RALBFv3_RS03940 0.51 +0.6
870,983 - RALBFv3_RS03940 0.51 +0.8
870,985 + RALBFv3_RS03940 0.51 +0.2
870,985 + RALBFv3_RS03940 0.51 +1.0
870,985 + RALBFv3_RS03940 0.51 +0.5
870,985 + RALBFv3_RS03940 0.51 +0.3
870,987 - RALBFv3_RS03940 0.51 +0.1
871,072 + RALBFv3_RS03940 0.54 +1.2
871,072 + RALBFv3_RS03940 0.54 +0.5
871,135 + RALBFv3_RS03940 0.55 -0.2
871,136 - RALBFv3_RS03940 0.55 +1.0
871,198 + RALBFv3_RS03940 0.57 +0.2
871,198 + RALBFv3_RS03940 0.57 +0.8
871,276 + RALBFv3_RS03940 0.59 +0.8
871,393 + RALBFv3_RS03940 0.62 +0.5
871,444 + RALBFv3_RS03940 0.63 +0.7
871,555 + RALBFv3_RS03940 0.66 +0.8
871,556 - RALBFv3_RS03940 0.66 -0.5
871,634 - RALBFv3_RS03940 0.68 +0.8
871,634 - RALBFv3_RS03940 0.68 -0.5
871,999 - RALBFv3_RS03940 0.77 +0.4
872,019 - RALBFv3_RS03940 0.77 +0.2
872,086 + RALBFv3_RS03940 0.79 +0.4
872,317 + RALBFv3_RS03940 0.85 +0.5
872,317 + RALBFv3_RS03940 0.85 -0.4
872,482 + RALBFv3_RS03940 0.89 +1.4
872,524 + +0.5
872,683 + -0.2
872,683 + +0.3
872,683 + +0.1
872,684 - +1.8
872,684 - +0.4
872,749 + +0.7
872,924 + +1.1
872,924 + +0.2
872,924 + -1.3
872,925 - +0.4
872,925 - +0.1
872,925 - +0.4
873,059 + +0.6
873,060 - +0.1
873,138 - +1.0
873,206 + RALBFv3_RS03945 0.11 +0.8
873,206 + RALBFv3_RS03945 0.11 +0.7
873,207 - RALBFv3_RS03945 0.11 +0.7
873,207 - RALBFv3_RS03945 0.11 +0.3
873,207 - RALBFv3_RS03945 0.11 +0.5
873,377 + RALBFv3_RS03945 0.17 +0.9
873,378 - RALBFv3_RS03945 0.17 +0.4
873,389 + RALBFv3_RS03945 0.17 +0.7
873,389 + RALBFv3_RS03945 0.17 -0.6
873,390 - RALBFv3_RS03945 0.17 -0.1
873,419 + RALBFv3_RS03945 0.18 +0.8
873,420 - RALBFv3_RS03945 0.18 -0.1
873,425 + RALBFv3_RS03945 0.18 +1.0
873,470 + RALBFv3_RS03945 0.20 +0.6
873,471 - RALBFv3_RS03945 0.20 +0.2
873,471 - RALBFv3_RS03945 0.20 +1.0
873,478 + RALBFv3_RS03945 0.20 +0.6
873,479 + RALBFv3_RS03945 0.20 +0.5
873,479 + RALBFv3_RS03945 0.20 +1.5
873,479 + RALBFv3_RS03945 0.20 +0.0
873,479 + RALBFv3_RS03945 0.20 +0.2
873,480 - RALBFv3_RS03945 0.20 +0.1
873,480 - RALBFv3_RS03945 0.20 +0.2
873,480 - RALBFv3_RS03945 0.20 +0.3
873,480 - RALBFv3_RS03945 0.20 -0.1
873,480 - RALBFv3_RS03945 0.20 +0.6
873,480 - RALBFv3_RS03945 0.20 +0.6
873,554 + RALBFv3_RS03945 0.23 +1.5
873,557 + RALBFv3_RS03945 0.23 -0.5
873,557 + RALBFv3_RS03945 0.23 +0.8
873,557 + RALBFv3_RS03945 0.23 +0.5
873,557 + RALBFv3_RS03945 0.23 +1.2
873,558 - RALBFv3_RS03945 0.23 +0.4
873,580 - RALBFv3_RS03945 0.24 -0.2
873,582 - RALBFv3_RS03945 0.24 +0.7
873,820 - RALBFv3_RS03945 0.32 +0.0
873,822 - RALBFv3_RS03945 0.32 +0.2
873,822 - RALBFv3_RS03945 0.32 -1.5
873,822 - RALBFv3_RS03945 0.32 -0.1

Or see this region's nucleotide sequence