Experiment: Growth at pH8 and (C) D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFLU_RS26480 and PFLU_RS26485 are separated by 124 nucleotides PFLU_RS26485 and PFLU_RS26490 are separated by 9 nucleotides PFLU_RS26490 and PFLU_RS26495 overlap by 4 nucleotides
PFLU_RS26480: PFLU_RS26480 - ATP-dependent helicase HrpB, at 5,918,880 to 5,921,390
_RS26480
PFLU_RS26485: PFLU_RS26485 - hypothetical protein, at 5,921,515 to 5,921,934
_RS26485
PFLU_RS26490: PFLU_RS26490 - cation diffusion facilitator family transporter, at 5,921,944 to 5,922,837
_RS26490
PFLU_RS26495: PFLU_RS26495 - glycine zipper family protein, at 5,922,834 to 5,923,907
_RS26495
Position (kb) 5921
5922 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 5920.844 kb on + strand, within PFLU_RS26480 at 5920.844 kb on + strand, within PFLU_RS26480 at 5920.844 kb on + strand, within PFLU_RS26480 at 5920.844 kb on + strand, within PFLU_RS26480 at 5920.844 kb on + strand, within PFLU_RS26480 at 5920.844 kb on + strand, within PFLU_RS26480 at 5920.844 kb on + strand, within PFLU_RS26480 at 5920.844 kb on + strand, within PFLU_RS26480 at 5920.844 kb on + strand, within PFLU_RS26480 at 5920.844 kb on + strand, within PFLU_RS26480 at 5920.844 kb on + strand, within PFLU_RS26480 at 5920.844 kb on + strand, within PFLU_RS26480 at 5920.844 kb on + strand, within PFLU_RS26480 at 5920.845 kb on - strand, within PFLU_RS26480 at 5920.845 kb on - strand, within PFLU_RS26480 at 5920.845 kb on - strand, within PFLU_RS26480 at 5920.845 kb on - strand, within PFLU_RS26480 at 5920.845 kb on - strand, within PFLU_RS26480 at 5920.845 kb on - strand, within PFLU_RS26480 at 5920.845 kb on - strand, within PFLU_RS26480 at 5920.845 kb on - strand, within PFLU_RS26480 at 5920.845 kb on - strand, within PFLU_RS26480 at 5921.295 kb on - strand at 5921.361 kb on + strand at 5921.362 kb on - strand at 5921.416 kb on + strand at 5921.416 kb on + strand at 5921.416 kb on + strand at 5921.416 kb on + strand at 5921.416 kb on + strand at 5921.417 kb on - strand at 5921.417 kb on - strand at 5921.417 kb on - strand at 5921.419 kb on - strand at 5921.465 kb on + strand at 5921.466 kb on - strand at 5921.477 kb on + strand at 5921.477 kb on + strand at 5921.477 kb on + strand at 5921.477 kb on + strand at 5921.477 kb on + strand at 5921.477 kb on + strand at 5921.477 kb on + strand at 5921.477 kb on + strand at 5921.477 kb on + strand at 5921.477 kb on + strand at 5921.477 kb on + strand at 5921.477 kb on + strand at 5921.477 kb on + strand at 5921.477 kb on + strand at 5921.477 kb on + strand at 5921.477 kb on + strand at 5921.477 kb on + strand at 5921.477 kb on + strand at 5921.477 kb on + strand at 5921.477 kb on + strand at 5921.477 kb on + strand at 5921.477 kb on + strand at 5921.477 kb on + strand at 5921.477 kb on + strand at 5921.477 kb on + strand at 5921.477 kb on + strand at 5921.477 kb on + strand at 5921.477 kb on + strand at 5921.477 kb on + strand at 5921.477 kb on + strand at 5921.477 kb on + strand at 5921.477 kb on + strand at 5921.477 kb on + strand at 5921.477 kb on + strand at 5921.477 kb on + strand at 5921.477 kb on + strand at 5921.477 kb on + strand at 5921.477 kb on + strand at 5921.477 kb on + strand at 5921.477 kb on + strand at 5921.478 kb on - strand at 5921.478 kb on - strand at 5921.478 kb on - strand at 5921.478 kb on - strand at 5921.478 kb on - strand at 5921.478 kb on - strand at 5921.478 kb on - strand at 5921.478 kb on - strand at 5921.478 kb on - strand at 5921.478 kb on - strand at 5921.478 kb on - strand at 5921.478 kb on - strand at 5921.478 kb on - strand at 5921.478 kb on - strand at 5921.478 kb on - strand at 5921.478 kb on - strand at 5921.478 kb on - strand at 5921.478 kb on - strand at 5921.478 kb on - strand at 5921.478 kb on - strand at 5921.478 kb on - strand at 5921.478 kb on - strand at 5921.478 kb on - strand at 5921.478 kb on - strand at 5921.478 kb on - strand at 5921.478 kb on - strand at 5921.478 kb on - strand at 5921.478 kb on - strand at 5921.478 kb on - strand at 5921.478 kb on - strand at 5921.478 kb on - strand at 5921.478 kb on - strand at 5921.478 kb on - strand at 5921.478 kb on - strand at 5921.478 kb on - strand at 5921.478 kb on - strand at 5921.478 kb on - strand at 5921.478 kb on - strand at 5921.478 kb on - strand at 5921.478 kb on - strand at 5921.478 kb on - strand at 5921.478 kb on - strand at 5921.478 kb on - strand at 5921.478 kb on - strand at 5921.478 kb on - strand at 5921.479 kb on + strand at 5921.479 kb on + strand at 5921.479 kb on + strand at 5921.479 kb on + strand at 5921.479 kb on + strand at 5921.479 kb on + strand at 5921.479 kb on + strand at 5921.479 kb on + strand at 5921.479 kb on + strand at 5921.479 kb on + strand at 5921.479 kb on + strand at 5921.479 kb on + strand at 5921.479 kb on + strand at 5921.479 kb on + strand at 5921.479 kb on + strand at 5921.479 kb on + strand at 5921.479 kb on + strand at 5921.479 kb on + strand at 5921.479 kb on + strand at 5921.479 kb on + strand at 5921.479 kb on + strand at 5921.479 kb on + strand at 5921.479 kb on + strand at 5921.479 kb on + strand at 5921.479 kb on + strand at 5921.480 kb on - strand at 5921.480 kb on - strand at 5921.480 kb on - strand at 5921.480 kb on - strand at 5921.480 kb on - strand at 5921.480 kb on - strand at 5921.480 kb on - strand at 5921.480 kb on - strand at 5921.480 kb on - strand at 5921.480 kb on - strand at 5921.480 kb on - strand at 5921.480 kb on - strand at 5921.480 kb on - strand at 5921.480 kb on - strand at 5921.480 kb on - strand at 5921.480 kb on - strand at 5921.480 kb on - strand at 5921.480 kb on - strand at 5921.480 kb on - strand at 5921.480 kb on - strand at 5921.480 kb on - strand at 5921.480 kb on - strand at 5921.480 kb on - strand at 5921.480 kb on - strand at 5921.480 kb on - strand at 5921.480 kb on - strand at 5921.480 kb on - strand at 5921.480 kb on - strand at 5921.480 kb on - strand at 5921.481 kb on + strand at 5921.481 kb on + strand at 5921.481 kb on + strand at 5921.481 kb on + strand at 5921.481 kb on + strand at 5921.481 kb on + strand at 5921.481 kb on + strand at 5921.481 kb on + strand at 5921.481 kb on + strand at 5921.481 kb on + strand at 5921.481 kb on + strand at 5921.481 kb on + strand at 5921.481 kb on + strand at 5921.481 kb on + strand at 5921.481 kb on + strand at 5921.481 kb on + strand at 5921.481 kb on + strand at 5921.481 kb on + strand at 5921.481 kb on + strand at 5921.481 kb on + strand at 5921.481 kb on + strand at 5921.481 kb on + strand at 5921.481 kb on + strand at 5921.481 kb on + strand at 5921.481 kb on + strand at 5921.481 kb on + strand at 5921.481 kb on + strand at 5921.481 kb on + strand at 5921.481 kb on + strand at 5921.481 kb on + strand at 5921.481 kb on + strand at 5921.482 kb on - strand at 5921.482 kb on - strand at 5921.482 kb on - strand at 5921.482 kb on - strand at 5921.482 kb on - strand at 5921.482 kb on - strand at 5921.482 kb on - strand at 5921.482 kb on - strand at 5921.482 kb on - strand at 5921.482 kb on - strand at 5921.482 kb on - strand at 5921.482 kb on - strand at 5921.482 kb on - strand at 5921.482 kb on - strand at 5921.482 kb on - strand at 5921.482 kb on - strand at 5921.482 kb on - strand at 5921.482 kb on - strand at 5921.482 kb on - strand at 5921.482 kb on - strand at 5921.482 kb on - strand at 5921.482 kb on - strand at 5921.482 kb on - strand at 5921.482 kb on - strand at 5921.482 kb on - strand at 5921.482 kb on - strand at 5921.482 kb on - strand at 5921.490 kb on - strand at 5921.490 kb on - strand at 5921.520 kb on + strand at 5921.597 kb on - strand, within PFLU_RS26485 at 5921.674 kb on + strand, within PFLU_RS26485 at 5921.675 kb on - strand, within PFLU_RS26485 at 5921.675 kb on - strand, within PFLU_RS26485 at 5921.675 kb on - strand, within PFLU_RS26485 at 5921.675 kb on - strand, within PFLU_RS26485 at 5921.675 kb on - strand, within PFLU_RS26485 at 5921.729 kb on - strand, within PFLU_RS26485 at 5921.932 kb on + strand at 5921.943 kb on + strand at 5921.943 kb on + strand at 5921.943 kb on + strand at 5921.943 kb on + strand at 5921.943 kb on + strand at 5921.943 kb on + strand at 5921.943 kb on + strand at 5921.944 kb on - strand at 5921.944 kb on - strand at 5921.944 kb on - strand at 5921.944 kb on - strand at 5921.944 kb on - strand at 5921.944 kb on - strand at 5922.021 kb on + strand at 5922.021 kb on + strand at 5922.022 kb on - strand at 5922.022 kb on - strand at 5922.022 kb on - strand at 5922.022 kb on - strand at 5922.022 kb on - strand at 5922.024 kb on + strand at 5922.024 kb on + strand at 5922.024 kb on + strand at 5922.025 kb on - strand at 5922.025 kb on - strand at 5922.025 kb on - strand at 5922.025 kb on - strand at 5922.025 kb on - strand at 5922.025 kb on - strand at 5922.253 kb on + strand, within PFLU_RS26490 at 5922.253 kb on + strand, within PFLU_RS26490 at 5922.254 kb on - strand, within PFLU_RS26490 at 5922.326 kb on + strand, within PFLU_RS26490 at 5922.327 kb on - strand, within PFLU_RS26490 at 5922.410 kb on - strand, within PFLU_RS26490 at 5922.514 kb on + strand, within PFLU_RS26490 at 5922.515 kb on - strand, within PFLU_RS26490 at 5922.829 kb on - strand at 5922.829 kb on - strand at 5922.835 kb on + strand at 5922.835 kb on + strand at 5922.836 kb on - strand at 5922.836 kb on - strand at 5922.836 kb on - strand at 5922.836 kb on - strand at 5922.836 kb on - strand at 5922.838 kb on + strand at 5922.838 kb on + strand at 5922.838 kb on + strand at 5922.838 kb on + strand at 5922.838 kb on + strand at 5922.838 kb on + strand at 5922.838 kb on + strand at 5922.839 kb on - strand at 5922.839 kb on - strand at 5922.839 kb on - strand at 5922.839 kb on - strand at 5922.839 kb on - strand at 5922.839 kb on - strand at 5922.839 kb on - strand at 5922.850 kb on + strand at 5922.919 kb on + strand at 5922.919 kb on + strand at 5922.919 kb on + strand at 5922.919 kb on + strand at 5922.919 kb on + strand at 5922.919 kb on + strand at 5922.919 kb on + strand at 5922.919 kb on + strand at 5922.920 kb on - strand at 5922.920 kb on - strand at 5922.920 kb on - strand at 5922.920 kb on - strand at 5922.920 kb on - strand at 5922.920 kb on - strand at 5922.920 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Growth at pH8 and (C) D-Glucose remove 5,920,844 + PFLU_RS26480 0.78 -2.6 5,920,844 + PFLU_RS26480 0.78 -0.3 5,920,844 + PFLU_RS26480 0.78 -1.2 5,920,844 + PFLU_RS26480 0.78 -1.0 5,920,844 + PFLU_RS26480 0.78 +2.8 5,920,844 + PFLU_RS26480 0.78 -2.3 5,920,844 + PFLU_RS26480 0.78 -0.0 5,920,844 + PFLU_RS26480 0.78 +0.1 5,920,844 + PFLU_RS26480 0.78 -0.3 5,920,844 + PFLU_RS26480 0.78 +0.2 5,920,844 + PFLU_RS26480 0.78 +3.3 5,920,844 + PFLU_RS26480 0.78 +0.1 5,920,844 + PFLU_RS26480 0.78 +0.2 5,920,845 - PFLU_RS26480 0.78 +0.5 5,920,845 - PFLU_RS26480 0.78 +0.7 5,920,845 - PFLU_RS26480 0.78 -0.5 5,920,845 - PFLU_RS26480 0.78 +0.8 5,920,845 - PFLU_RS26480 0.78 +0.1 5,920,845 - PFLU_RS26480 0.78 +1.0 5,920,845 - PFLU_RS26480 0.78 -0.0 5,920,845 - PFLU_RS26480 0.78 +0.4 5,920,845 - PFLU_RS26480 0.78 +0.7 5,921,295 - -1.9 5,921,361 + -0.8 5,921,362 - +1.0 5,921,416 + +1.3 5,921,416 + -0.6 5,921,416 + -1.6 5,921,416 + -0.0 5,921,416 + +1.0 5,921,417 - +0.7 5,921,417 - +0.7 5,921,417 - +0.4 5,921,419 - +2.2 5,921,465 + -1.4 5,921,466 - -1.9 5,921,477 + +0.4 5,921,477 + -0.7 5,921,477 + +0.8 5,921,477 + +1.9 5,921,477 + -0.7 5,921,477 + +0.4 5,921,477 + -2.5 5,921,477 + +1.2 5,921,477 + -0.5 5,921,477 + -0.4 5,921,477 + +1.0 5,921,477 + +0.4 5,921,477 + +1.3 5,921,477 + -1.4 5,921,477 + +2.0 5,921,477 + -2.3 5,921,477 + -2.0 5,921,477 + +0.5 5,921,477 + -3.2 5,921,477 + -1.2 5,921,477 + -0.6 5,921,477 + -1.2 5,921,477 + -0.6 5,921,477 + +1.1 5,921,477 + -1.4 5,921,477 + +1.0 5,921,477 + +1.5 5,921,477 + +1.4 5,921,477 + +0.3 5,921,477 + -1.4 5,921,477 + -1.9 5,921,477 + +1.2 5,921,477 + -0.0 5,921,477 + +0.0 5,921,477 + +0.4 5,921,477 + +2.1 5,921,477 + -0.4 5,921,477 + +1.8 5,921,477 + -1.2 5,921,477 + -0.3 5,921,478 - +1.9 5,921,478 - -1.2 5,921,478 - +0.7 5,921,478 - +0.6 5,921,478 - -1.3 5,921,478 - +0.3 5,921,478 - +2.0 5,921,478 - +1.7 5,921,478 - -0.7 5,921,478 - -0.3 5,921,478 - -1.6 5,921,478 - -1.4 5,921,478 - -0.4 5,921,478 - -0.4 5,921,478 - +1.1 5,921,478 - +0.3 5,921,478 - -1.3 5,921,478 - -1.2 5,921,478 - -0.3 5,921,478 - +0.8 5,921,478 - +0.6 5,921,478 - +1.2 5,921,478 - +1.3 5,921,478 - -0.3 5,921,478 - +1.9 5,921,478 - -1.2 5,921,478 - -1.0 5,921,478 - +1.2 5,921,478 - -2.4 5,921,478 - -2.4 5,921,478 - +1.0 5,921,478 - -2.4 5,921,478 - +2.0 5,921,478 - +0.0 5,921,478 - +1.1 5,921,478 - -0.6 5,921,478 - -0.3 5,921,478 - -2.6 5,921,478 - -3.8 5,921,478 - -1.7 5,921,478 - +0.3 5,921,478 - -0.0 5,921,478 - +1.2 5,921,478 - +1.5 5,921,478 - +2.4 5,921,479 + -3.0 5,921,479 + +0.9 5,921,479 + -0.5 5,921,479 + -0.3 5,921,479 + +0.9 5,921,479 + +1.1 5,921,479 + -1.0 5,921,479 + +0.7 5,921,479 + +1.2 5,921,479 + +1.0 5,921,479 + +2.0 5,921,479 + -2.4 5,921,479 + -1.5 5,921,479 + -1.5 5,921,479 + -1.7 5,921,479 + +0.2 5,921,479 + -0.0 5,921,479 + -2.6 5,921,479 + +0.5 5,921,479 + +1.0 5,921,479 + +3.1 5,921,479 + +1.3 5,921,479 + -2.4 5,921,479 + -3.1 5,921,479 + -0.0 5,921,480 - +0.4 5,921,480 - +0.9 5,921,480 - -0.8 5,921,480 - -1.5 5,921,480 - +0.1 5,921,480 - -1.7 5,921,480 - -1.6 5,921,480 - +1.7 5,921,480 - +1.0 5,921,480 - -0.6 5,921,480 - +0.5 5,921,480 - +0.4 5,921,480 - +0.2 5,921,480 - -1.1 5,921,480 - +0.8 5,921,480 - -0.4 5,921,480 - +0.3 5,921,480 - -0.0 5,921,480 - +1.1 5,921,480 - +0.6 5,921,480 - +0.8 5,921,480 - +0.9 5,921,480 - +1.4 5,921,480 - +0.4 5,921,480 - +2.2 5,921,480 - +1.7 5,921,480 - +1.2 5,921,480 - +0.4 5,921,480 - -2.0 5,921,481 + +1.8 5,921,481 + -0.0 5,921,481 + -0.5 5,921,481 + -2.3 5,921,481 + +3.3 5,921,481 + -1.1 5,921,481 + +0.1 5,921,481 + +0.6 5,921,481 + -1.9 5,921,481 + -3.2 5,921,481 + +0.4 5,921,481 + -0.8 5,921,481 + -0.4 5,921,481 + +0.1 5,921,481 + -0.4 5,921,481 + +0.5 5,921,481 + +0.5 5,921,481 + +2.4 5,921,481 + +0.4 5,921,481 + +1.4 5,921,481 + -2.3 5,921,481 + -2.2 5,921,481 + +0.4 5,921,481 + -0.4 5,921,481 + +1.3 5,921,481 + +1.4 5,921,481 + +0.1 5,921,481 + +1.1 5,921,481 + -2.3 5,921,481 + -0.1 5,921,481 + -1.8 5,921,482 - -0.8 5,921,482 - -1.0 5,921,482 - +1.5 5,921,482 - -1.8 5,921,482 - +0.9 5,921,482 - +0.2 5,921,482 - +0.8 5,921,482 - -1.5 5,921,482 - +0.2 5,921,482 - -0.2 5,921,482 - +0.4 5,921,482 - -2.7 5,921,482 - +0.0 5,921,482 - -1.2 5,921,482 - -2.0 5,921,482 - -1.3 5,921,482 - +1.3 5,921,482 - -0.3 5,921,482 - -2.6 5,921,482 - +2.2 5,921,482 - -2.4 5,921,482 - -0.6 5,921,482 - -0.3 5,921,482 - -0.8 5,921,482 - -0.4 5,921,482 - -1.3 5,921,482 - -0.8 5,921,490 - -1.9 5,921,490 - -0.8 5,921,520 + +1.6 5,921,597 - PFLU_RS26485 0.20 -0.1 5,921,674 + PFLU_RS26485 0.38 -0.7 5,921,675 - PFLU_RS26485 0.38 -0.3 5,921,675 - PFLU_RS26485 0.38 -1.4 5,921,675 - PFLU_RS26485 0.38 -1.0 5,921,675 - PFLU_RS26485 0.38 -1.2 5,921,675 - PFLU_RS26485 0.38 -3.0 5,921,729 - PFLU_RS26485 0.51 +0.1 5,921,932 + -0.0 5,921,943 + -0.6 5,921,943 + +2.4 5,921,943 + -1.1 5,921,943 + -0.6 5,921,943 + +0.4 5,921,943 + +1.1 5,921,943 + -0.2 5,921,944 - -1.2 5,921,944 - -1.7 5,921,944 - -1.0 5,921,944 - +1.2 5,921,944 - +0.7 5,921,944 - +0.5 5,922,021 + +0.2 5,922,021 + -2.0 5,922,022 - +0.7 5,922,022 - -3.1 5,922,022 - -1.3 5,922,022 - -0.1 5,922,022 - -0.7 5,922,024 + -1.2 5,922,024 + +0.2 5,922,024 + -0.6 5,922,025 - -0.3 5,922,025 - -0.1 5,922,025 - +0.1 5,922,025 - -0.6 5,922,025 - -0.6 5,922,025 - -0.4 5,922,253 + PFLU_RS26490 0.35 -0.8 5,922,253 + PFLU_RS26490 0.35 +0.4 5,922,254 - PFLU_RS26490 0.35 -1.5 5,922,326 + PFLU_RS26490 0.43 +0.4 5,922,327 - PFLU_RS26490 0.43 -0.8 5,922,410 - PFLU_RS26490 0.52 +1.7 5,922,514 + PFLU_RS26490 0.64 +0.2 5,922,515 - PFLU_RS26490 0.64 +0.6 5,922,829 - -2.6 5,922,829 - -1.2 5,922,835 + +1.4 5,922,835 + +0.2 5,922,836 - +0.9 5,922,836 - -0.9 5,922,836 - +0.7 5,922,836 - +1.0 5,922,836 - +0.5 5,922,838 + -0.6 5,922,838 + +0.6 5,922,838 + +2.0 5,922,838 + -1.7 5,922,838 + +0.0 5,922,838 + -1.0 5,922,838 + +0.7 5,922,839 - -2.6 5,922,839 - +0.8 5,922,839 - -2.4 5,922,839 - -1.8 5,922,839 - +0.1 5,922,839 - -1.4 5,922,839 - -3.5 5,922,850 + +0.4 5,922,919 + +0.6 5,922,919 + -0.1 5,922,919 + -1.7 5,922,919 + +1.2 5,922,919 + +0.0 5,922,919 + -2.0 5,922,919 + +2.0 5,922,919 + -1.0 5,922,920 - +0.1 5,922,920 - -0.8 5,922,920 - +2.2 5,922,920 - -0.4 5,922,920 - -1.2 5,922,920 - +0.4 5,922,920 - -0.4
Or see this region's nucleotide sequence