Experiment: Growth at pH8 and (C) D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFLU_RS24970 and PFLU_RS24975 overlap by 4 nucleotides PFLU_RS24975 and PFLU_RS24980 are separated by 9 nucleotides PFLU_RS24980 and PFLU_RS24985 are separated by 39 nucleotides
PFLU_RS24970: PFLU_RS24970 - chemoreceptor glutamine deamidase CheD, at 5,591,945 to 5,592,478
_RS24970
PFLU_RS24975: PFLU_RS24975 - SAM-dependent methyltransferase, at 5,592,475 to 5,593,284
_RS24975
PFLU_RS24980: PFLU_RS24980 - purine-binding chemotaxis protein CheW, at 5,593,294 to 5,593,833
_RS24980
PFLU_RS24985: PFLU_RS24985 - HAMP domain-containing protein, at 5,593,873 to 5,595,531
_RS24985
Position (kb) 5593
5594 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 5592.397 kb on + strand, within PFLU_RS24970 at 5592.397 kb on + strand, within PFLU_RS24970 at 5592.398 kb on - strand, within PFLU_RS24970 at 5592.398 kb on - strand, within PFLU_RS24970 at 5592.398 kb on - strand, within PFLU_RS24970 at 5592.398 kb on - strand, within PFLU_RS24970 at 5592.446 kb on + strand at 5592.446 kb on + strand at 5592.446 kb on + strand at 5592.488 kb on + strand at 5592.560 kb on + strand, within PFLU_RS24975 at 5592.560 kb on + strand, within PFLU_RS24975 at 5592.560 kb on + strand, within PFLU_RS24975 at 5592.561 kb on - strand, within PFLU_RS24975 at 5592.561 kb on - strand, within PFLU_RS24975 at 5592.561 kb on - strand, within PFLU_RS24975 at 5592.561 kb on - strand, within PFLU_RS24975 at 5592.561 kb on - strand, within PFLU_RS24975 at 5592.561 kb on - strand, within PFLU_RS24975 at 5592.626 kb on + strand, within PFLU_RS24975 at 5592.627 kb on - strand, within PFLU_RS24975 at 5592.627 kb on - strand, within PFLU_RS24975 at 5592.627 kb on - strand, within PFLU_RS24975 at 5592.627 kb on - strand, within PFLU_RS24975 at 5592.776 kb on + strand, within PFLU_RS24975 at 5592.776 kb on + strand, within PFLU_RS24975 at 5592.776 kb on + strand, within PFLU_RS24975 at 5592.776 kb on + strand, within PFLU_RS24975 at 5592.776 kb on + strand, within PFLU_RS24975 at 5592.777 kb on - strand, within PFLU_RS24975 at 5592.777 kb on - strand, within PFLU_RS24975 at 5592.777 kb on - strand, within PFLU_RS24975 at 5592.777 kb on - strand, within PFLU_RS24975 at 5592.777 kb on - strand, within PFLU_RS24975 at 5592.777 kb on - strand, within PFLU_RS24975 at 5592.777 kb on - strand, within PFLU_RS24975 at 5592.824 kb on + strand, within PFLU_RS24975 at 5592.824 kb on + strand, within PFLU_RS24975 at 5592.824 kb on + strand, within PFLU_RS24975 at 5592.824 kb on + strand, within PFLU_RS24975 at 5592.825 kb on - strand, within PFLU_RS24975 at 5592.930 kb on - strand, within PFLU_RS24975 at 5592.930 kb on - strand, within PFLU_RS24975 at 5592.930 kb on - strand, within PFLU_RS24975 at 5593.047 kb on - strand, within PFLU_RS24975 at 5593.124 kb on + strand, within PFLU_RS24975 at 5593.124 kb on + strand, within PFLU_RS24975 at 5593.124 kb on + strand, within PFLU_RS24975 at 5593.125 kb on - strand, within PFLU_RS24975 at 5593.125 kb on - strand, within PFLU_RS24975 at 5593.133 kb on + strand, within PFLU_RS24975 at 5593.133 kb on + strand, within PFLU_RS24975 at 5593.133 kb on + strand, within PFLU_RS24975 at 5593.133 kb on + strand, within PFLU_RS24975 at 5593.133 kb on + strand, within PFLU_RS24975 at 5593.133 kb on + strand, within PFLU_RS24975 at 5593.133 kb on + strand, within PFLU_RS24975 at 5593.133 kb on + strand, within PFLU_RS24975 at 5593.133 kb on + strand, within PFLU_RS24975 at 5593.133 kb on + strand, within PFLU_RS24975 at 5593.133 kb on + strand, within PFLU_RS24975 at 5593.133 kb on + strand, within PFLU_RS24975 at 5593.133 kb on + strand, within PFLU_RS24975 at 5593.133 kb on + strand, within PFLU_RS24975 at 5593.133 kb on + strand, within PFLU_RS24975 at 5593.133 kb on + strand, within PFLU_RS24975 at 5593.133 kb on + strand, within PFLU_RS24975 at 5593.133 kb on + strand, within PFLU_RS24975 at 5593.133 kb on + strand, within PFLU_RS24975 at 5593.133 kb on + strand, within PFLU_RS24975 at 5593.133 kb on + strand, within PFLU_RS24975 at 5593.133 kb on + strand, within PFLU_RS24975 at 5593.133 kb on + strand, within PFLU_RS24975 at 5593.133 kb on + strand, within PFLU_RS24975 at 5593.133 kb on + strand, within PFLU_RS24975 at 5593.133 kb on + strand, within PFLU_RS24975 at 5593.133 kb on + strand, within PFLU_RS24975 at 5593.133 kb on + strand, within PFLU_RS24975 at 5593.133 kb on + strand, within PFLU_RS24975 at 5593.133 kb on + strand, within PFLU_RS24975 at 5593.134 kb on - strand, within PFLU_RS24975 at 5593.134 kb on - strand, within PFLU_RS24975 at 5593.134 kb on - strand, within PFLU_RS24975 at 5593.134 kb on - strand, within PFLU_RS24975 at 5593.134 kb on - strand, within PFLU_RS24975 at 5593.134 kb on - strand, within PFLU_RS24975 at 5593.134 kb on - strand, within PFLU_RS24975 at 5593.134 kb on - strand, within PFLU_RS24975 at 5593.134 kb on - strand, within PFLU_RS24975 at 5593.134 kb on - strand, within PFLU_RS24975 at 5593.134 kb on - strand, within PFLU_RS24975 at 5593.134 kb on - strand, within PFLU_RS24975 at 5593.134 kb on - strand, within PFLU_RS24975 at 5593.134 kb on - strand, within PFLU_RS24975 at 5593.134 kb on - strand, within PFLU_RS24975 at 5593.134 kb on - strand, within PFLU_RS24975 at 5593.148 kb on + strand, within PFLU_RS24975 at 5593.148 kb on + strand, within PFLU_RS24975 at 5593.148 kb on + strand, within PFLU_RS24975 at 5593.149 kb on - strand, within PFLU_RS24975 at 5593.149 kb on - strand, within PFLU_RS24975 at 5593.775 kb on + strand, within PFLU_RS24980 at 5593.775 kb on + strand, within PFLU_RS24980 at 5593.775 kb on + strand, within PFLU_RS24980 at 5593.776 kb on - strand, within PFLU_RS24980 at 5593.776 kb on - strand, within PFLU_RS24980 at 5593.822 kb on + strand at 5593.822 kb on + strand at 5593.823 kb on - strand at 5593.839 kb on + strand at 5593.839 kb on + strand at 5593.840 kb on - strand at 5593.840 kb on - strand at 5593.840 kb on - strand at 5593.840 kb on - strand at 5593.851 kb on + strand at 5593.852 kb on - strand at 5593.852 kb on - strand at 5593.852 kb on - strand at 5593.852 kb on - strand at 5593.919 kb on + strand at 5593.919 kb on + strand at 5593.919 kb on + strand at 5593.920 kb on - strand at 5593.920 kb on - strand at 5593.920 kb on - strand at 5594.510 kb on - strand, within PFLU_RS24985 at 5594.745 kb on + strand, within PFLU_RS24985 at 5594.745 kb on + strand, within PFLU_RS24985 at 5594.745 kb on + strand, within PFLU_RS24985 at 5594.745 kb on + strand, within PFLU_RS24985 at 5594.745 kb on + strand, within PFLU_RS24985 at 5594.745 kb on + strand, within PFLU_RS24985 at 5594.745 kb on + strand, within PFLU_RS24985 at 5594.745 kb on + strand, within PFLU_RS24985 at 5594.745 kb on + strand, within PFLU_RS24985 at 5594.745 kb on + strand, within PFLU_RS24985 at 5594.745 kb on + strand, within PFLU_RS24985 at 5594.745 kb on + strand, within PFLU_RS24985 at 5594.745 kb on + strand, within PFLU_RS24985 at 5594.745 kb on + strand, within PFLU_RS24985 at 5594.746 kb on - strand, within PFLU_RS24985 at 5594.746 kb on - strand, within PFLU_RS24985 at 5594.746 kb on - strand, within PFLU_RS24985 at 5594.746 kb on - strand, within PFLU_RS24985 at 5594.746 kb on - strand, within PFLU_RS24985 at 5594.746 kb on - strand, within PFLU_RS24985 at 5594.746 kb on - strand, within PFLU_RS24985 at 5594.746 kb on - strand, within PFLU_RS24985 at 5594.746 kb on - strand, within PFLU_RS24985 at 5594.746 kb on - strand, within PFLU_RS24985 at 5594.746 kb on - strand, within PFLU_RS24985 at 5594.746 kb on - strand, within PFLU_RS24985 at 5594.746 kb on - strand, within PFLU_RS24985 at 5594.746 kb on - strand, within PFLU_RS24985 at 5594.746 kb on - strand, within PFLU_RS24985 at 5594.746 kb on - strand, within PFLU_RS24985 at 5594.769 kb on + strand, within PFLU_RS24985 at 5594.769 kb on + strand, within PFLU_RS24985 at 5594.769 kb on + strand, within PFLU_RS24985 at 5594.769 kb on + strand, within PFLU_RS24985 at 5594.769 kb on + strand, within PFLU_RS24985 at 5594.769 kb on + strand, within PFLU_RS24985 at 5594.770 kb on - strand, within PFLU_RS24985 at 5594.770 kb on - strand, within PFLU_RS24985 at 5594.770 kb on - strand, within PFLU_RS24985 at 5594.770 kb on - strand, within PFLU_RS24985
Per-strain Table
Position Strand Gene LocusTag Fraction Growth at pH8 and (C) D-Glucose remove 5,592,397 + PFLU_RS24970 0.85 +1.4 5,592,397 + PFLU_RS24970 0.85 +2.0 5,592,398 - PFLU_RS24970 0.85 +1.8 5,592,398 - PFLU_RS24970 0.85 -2.3 5,592,398 - PFLU_RS24970 0.85 -0.1 5,592,398 - PFLU_RS24970 0.85 +1.0 5,592,446 + -1.2 5,592,446 + -1.4 5,592,446 + -0.1 5,592,488 + -2.6 5,592,560 + PFLU_RS24975 0.10 -1.2 5,592,560 + PFLU_RS24975 0.10 -1.7 5,592,560 + PFLU_RS24975 0.10 +1.8 5,592,561 - PFLU_RS24975 0.11 +1.0 5,592,561 - PFLU_RS24975 0.11 -0.5 5,592,561 - PFLU_RS24975 0.11 +2.1 5,592,561 - PFLU_RS24975 0.11 -2.2 5,592,561 - PFLU_RS24975 0.11 +0.1 5,592,561 - PFLU_RS24975 0.11 -2.3 5,592,626 + PFLU_RS24975 0.19 -1.2 5,592,627 - PFLU_RS24975 0.19 -0.2 5,592,627 - PFLU_RS24975 0.19 -2.6 5,592,627 - PFLU_RS24975 0.19 +2.6 5,592,627 - PFLU_RS24975 0.19 +1.5 5,592,776 + PFLU_RS24975 0.37 -1.0 5,592,776 + PFLU_RS24975 0.37 -1.6 5,592,776 + PFLU_RS24975 0.37 -2.0 5,592,776 + PFLU_RS24975 0.37 +1.1 5,592,776 + PFLU_RS24975 0.37 -2.0 5,592,777 - PFLU_RS24975 0.37 -2.7 5,592,777 - PFLU_RS24975 0.37 +0.9 5,592,777 - PFLU_RS24975 0.37 +2.6 5,592,777 - PFLU_RS24975 0.37 -2.4 5,592,777 - PFLU_RS24975 0.37 -0.2 5,592,777 - PFLU_RS24975 0.37 +0.2 5,592,777 - PFLU_RS24975 0.37 +0.4 5,592,824 + PFLU_RS24975 0.43 -1.6 5,592,824 + PFLU_RS24975 0.43 +0.3 5,592,824 + PFLU_RS24975 0.43 -0.6 5,592,824 + PFLU_RS24975 0.43 +1.0 5,592,825 - PFLU_RS24975 0.43 -0.6 5,592,930 - PFLU_RS24975 0.56 -0.4 5,592,930 - PFLU_RS24975 0.56 -2.7 5,592,930 - PFLU_RS24975 0.56 -0.8 5,593,047 - PFLU_RS24975 0.71 +0.2 5,593,124 + PFLU_RS24975 0.80 -0.6 5,593,124 + PFLU_RS24975 0.80 -0.3 5,593,124 + PFLU_RS24975 0.80 +1.5 5,593,125 - PFLU_RS24975 0.80 -1.0 5,593,125 - PFLU_RS24975 0.80 +0.4 5,593,133 + PFLU_RS24975 0.81 -1.0 5,593,133 + PFLU_RS24975 0.81 +0.0 5,593,133 + PFLU_RS24975 0.81 +0.6 5,593,133 + PFLU_RS24975 0.81 -0.6 5,593,133 + PFLU_RS24975 0.81 +1.6 5,593,133 + PFLU_RS24975 0.81 -2.2 5,593,133 + PFLU_RS24975 0.81 -0.5 5,593,133 + PFLU_RS24975 0.81 -0.1 5,593,133 + PFLU_RS24975 0.81 +0.8 5,593,133 + PFLU_RS24975 0.81 -1.1 5,593,133 + PFLU_RS24975 0.81 +0.7 5,593,133 + PFLU_RS24975 0.81 +0.2 5,593,133 + PFLU_RS24975 0.81 -2.0 5,593,133 + PFLU_RS24975 0.81 +0.2 5,593,133 + PFLU_RS24975 0.81 +0.3 5,593,133 + PFLU_RS24975 0.81 -2.2 5,593,133 + PFLU_RS24975 0.81 -0.2 5,593,133 + PFLU_RS24975 0.81 +0.9 5,593,133 + PFLU_RS24975 0.81 -0.2 5,593,133 + PFLU_RS24975 0.81 +0.4 5,593,133 + PFLU_RS24975 0.81 -1.0 5,593,133 + PFLU_RS24975 0.81 +2.1 5,593,133 + PFLU_RS24975 0.81 +0.4 5,593,133 + PFLU_RS24975 0.81 -0.8 5,593,133 + PFLU_RS24975 0.81 -0.6 5,593,133 + PFLU_RS24975 0.81 -2.8 5,593,133 + PFLU_RS24975 0.81 -0.3 5,593,133 + PFLU_RS24975 0.81 +1.9 5,593,133 + PFLU_RS24975 0.81 -0.5 5,593,133 + PFLU_RS24975 0.81 -1.7 5,593,134 - PFLU_RS24975 0.81 -1.6 5,593,134 - PFLU_RS24975 0.81 +0.8 5,593,134 - PFLU_RS24975 0.81 -0.2 5,593,134 - PFLU_RS24975 0.81 +1.0 5,593,134 - PFLU_RS24975 0.81 +3.4 5,593,134 - PFLU_RS24975 0.81 +0.7 5,593,134 - PFLU_RS24975 0.81 -0.7 5,593,134 - PFLU_RS24975 0.81 +0.4 5,593,134 - PFLU_RS24975 0.81 +1.8 5,593,134 - PFLU_RS24975 0.81 +0.4 5,593,134 - PFLU_RS24975 0.81 -1.5 5,593,134 - PFLU_RS24975 0.81 -1.2 5,593,134 - PFLU_RS24975 0.81 +0.8 5,593,134 - PFLU_RS24975 0.81 +1.5 5,593,134 - PFLU_RS24975 0.81 -3.1 5,593,134 - PFLU_RS24975 0.81 -1.0 5,593,148 + PFLU_RS24975 0.83 +1.5 5,593,148 + PFLU_RS24975 0.83 +0.6 5,593,148 + PFLU_RS24975 0.83 +1.9 5,593,149 - PFLU_RS24975 0.83 -3.1 5,593,149 - PFLU_RS24975 0.83 +2.6 5,593,775 + PFLU_RS24980 0.89 +0.5 5,593,775 + PFLU_RS24980 0.89 -0.5 5,593,775 + PFLU_RS24980 0.89 -1.5 5,593,776 - PFLU_RS24980 0.89 +1.4 5,593,776 - PFLU_RS24980 0.89 -2.2 5,593,822 + -0.7 5,593,822 + +0.1 5,593,823 - -0.7 5,593,839 + -1.6 5,593,839 + -2.3 5,593,840 - -2.2 5,593,840 - +0.2 5,593,840 - +2.3 5,593,840 - -0.3 5,593,851 + +0.8 5,593,852 - -0.4 5,593,852 - -2.3 5,593,852 - +1.6 5,593,852 - +0.6 5,593,919 + -1.0 5,593,919 + -1.4 5,593,919 + +0.9 5,593,920 - +0.8 5,593,920 - +0.5 5,593,920 - +0.6 5,594,510 - PFLU_RS24985 0.38 +0.1 5,594,745 + PFLU_RS24985 0.53 -0.5 5,594,745 + PFLU_RS24985 0.53 -0.8 5,594,745 + PFLU_RS24985 0.53 +0.3 5,594,745 + PFLU_RS24985 0.53 -2.4 5,594,745 + PFLU_RS24985 0.53 +0.8 5,594,745 + PFLU_RS24985 0.53 -2.1 5,594,745 + PFLU_RS24985 0.53 -2.5 5,594,745 + PFLU_RS24985 0.53 -0.2 5,594,745 + PFLU_RS24985 0.53 -0.3 5,594,745 + PFLU_RS24985 0.53 +0.5 5,594,745 + PFLU_RS24985 0.53 +1.9 5,594,745 + PFLU_RS24985 0.53 -0.4 5,594,745 + PFLU_RS24985 0.53 -1.4 5,594,745 + PFLU_RS24985 0.53 +1.1 5,594,746 - PFLU_RS24985 0.53 -1.5 5,594,746 - PFLU_RS24985 0.53 +0.0 5,594,746 - PFLU_RS24985 0.53 -1.9 5,594,746 - PFLU_RS24985 0.53 +0.7 5,594,746 - PFLU_RS24985 0.53 -1.0 5,594,746 - PFLU_RS24985 0.53 -0.1 5,594,746 - PFLU_RS24985 0.53 +1.2 5,594,746 - PFLU_RS24985 0.53 -2.9 5,594,746 - PFLU_RS24985 0.53 +1.5 5,594,746 - PFLU_RS24985 0.53 -0.8 5,594,746 - PFLU_RS24985 0.53 -1.5 5,594,746 - PFLU_RS24985 0.53 -0.1 5,594,746 - PFLU_RS24985 0.53 +1.7 5,594,746 - PFLU_RS24985 0.53 -1.2 5,594,746 - PFLU_RS24985 0.53 -2.9 5,594,746 - PFLU_RS24985 0.53 +0.9 5,594,769 + PFLU_RS24985 0.54 -1.1 5,594,769 + PFLU_RS24985 0.54 +0.6 5,594,769 + PFLU_RS24985 0.54 +0.6 5,594,769 + PFLU_RS24985 0.54 +2.8 5,594,769 + PFLU_RS24985 0.54 +0.8 5,594,769 + PFLU_RS24985 0.54 -0.2 5,594,770 - PFLU_RS24985 0.54 +0.9 5,594,770 - PFLU_RS24985 0.54 +0.5 5,594,770 - PFLU_RS24985 0.54 +1.3 5,594,770 - PFLU_RS24985 0.54 +0.3
Or see this region's nucleotide sequence