Experiment: Growth at pH8 and (C) D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFLU_RS22385 and PFLU_RS22390 are separated by 0 nucleotides PFLU_RS22390 and PFLU_RS22395 are separated by 153 nucleotides PFLU_RS22395 and PFLU_RS22400 are separated by 106 nucleotides PFLU_RS22400 and PFLU_RS22405 are separated by 248 nucleotides
PFLU_RS22385: PFLU_RS22385 - oxygen-independent coproporphyrinogen III oxidase, at 5,033,704 to 5,035,086
_RS22385
PFLU_RS22390: PFLU_RS22390 - hypothetical protein, at 5,035,087 to 5,035,554
_RS22390
PFLU_RS22395: PFLU_RS22395 - fumarate/nitrate reduction transcriptional regulator Fnr, at 5,035,708 to 5,036,442
_RS22395
PFLU_RS22400: PFLU_RS22400 - adenine phosphoribosyltransferase, at 5,036,549 to 5,037,097
_RS22400
PFLU_RS22405: PFLU_RS22405 - IS110 family transposase, at 5,037,346 to 5,038,278
_RS22405
Position (kb) 5035
5036
5037 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 5034.722 kb on - strand, within PFLU_RS22385 at 5034.722 kb on - strand, within PFLU_RS22385 at 5034.910 kb on + strand, within PFLU_RS22385 at 5034.910 kb on + strand, within PFLU_RS22385 at 5034.911 kb on - strand, within PFLU_RS22385 at 5034.989 kb on + strand at 5034.990 kb on - strand at 5034.990 kb on - strand at 5035.042 kb on + strand at 5035.043 kb on - strand at 5035.084 kb on + strand at 5035.084 kb on + strand at 5035.084 kb on + strand at 5035.084 kb on + strand at 5035.084 kb on + strand at 5035.084 kb on + strand at 5035.084 kb on + strand at 5035.084 kb on + strand at 5035.084 kb on + strand at 5035.084 kb on + strand at 5035.084 kb on + strand at 5035.084 kb on + strand at 5035.084 kb on + strand at 5035.085 kb on - strand at 5035.085 kb on - strand at 5035.085 kb on - strand at 5035.085 kb on - strand at 5035.085 kb on - strand at 5035.085 kb on - strand at 5035.088 kb on + strand at 5035.088 kb on + strand at 5035.088 kb on + strand at 5035.088 kb on + strand at 5035.088 kb on + strand at 5035.089 kb on - strand at 5035.089 kb on - strand at 5035.089 kb on - strand at 5035.089 kb on - strand at 5035.131 kb on + strand at 5035.131 kb on + strand at 5035.132 kb on - strand at 5035.132 kb on - strand at 5035.246 kb on - strand, within PFLU_RS22390 at 5035.354 kb on - strand, within PFLU_RS22390 at 5035.413 kb on + strand, within PFLU_RS22390 at 5035.413 kb on + strand, within PFLU_RS22390 at 5035.414 kb on - strand, within PFLU_RS22390 at 5035.449 kb on + strand, within PFLU_RS22390 at 5035.450 kb on - strand, within PFLU_RS22390 at 5035.535 kb on + strand at 5035.535 kb on + strand at 5035.535 kb on + strand at 5035.535 kb on + strand at 5035.536 kb on - strand at 5035.536 kb on - strand at 5035.536 kb on - strand at 5035.536 kb on - strand at 5035.536 kb on - strand at 5035.536 kb on - strand at 5035.543 kb on + strand at 5035.543 kb on + strand at 5035.543 kb on + strand at 5035.543 kb on + strand at 5035.544 kb on - strand at 5035.544 kb on - strand at 5035.544 kb on - strand at 5035.544 kb on - strand at 5035.545 kb on + strand at 5035.545 kb on + strand at 5035.546 kb on - strand at 5035.546 kb on - strand at 5035.570 kb on + strand at 5035.570 kb on + strand at 5035.571 kb on - strand at 5035.571 kb on - strand at 5035.571 kb on - strand at 5035.574 kb on + strand at 5035.574 kb on + strand at 5035.574 kb on + strand at 5035.574 kb on + strand at 5035.574 kb on + strand at 5035.574 kb on + strand at 5035.574 kb on + strand at 5035.574 kb on + strand at 5035.574 kb on + strand at 5035.574 kb on + strand at 5035.574 kb on + strand at 5035.574 kb on + strand at 5035.574 kb on + strand at 5035.574 kb on + strand at 5035.574 kb on + strand at 5035.574 kb on + strand at 5035.574 kb on + strand at 5035.574 kb on + strand at 5035.575 kb on - strand at 5035.575 kb on - strand at 5035.575 kb on - strand at 5035.575 kb on - strand at 5035.575 kb on - strand at 5035.575 kb on - strand at 5035.575 kb on - strand at 5035.575 kb on - strand at 5035.575 kb on - strand at 5035.575 kb on - strand at 5035.575 kb on - strand at 5035.575 kb on - strand at 5035.575 kb on - strand at 5035.575 kb on - strand at 5035.575 kb on - strand at 5035.575 kb on - strand at 5035.575 kb on - strand at 5035.575 kb on - strand at 5035.575 kb on - strand at 5035.575 kb on - strand at 5035.578 kb on + strand at 5035.578 kb on + strand at 5035.578 kb on + strand at 5035.578 kb on + strand at 5035.578 kb on + strand at 5035.578 kb on + strand at 5035.578 kb on + strand at 5035.579 kb on - strand at 5035.579 kb on - strand at 5035.579 kb on - strand at 5035.579 kb on - strand at 5035.579 kb on - strand at 5035.579 kb on - strand at 5035.579 kb on - strand at 5035.579 kb on - strand at 5035.579 kb on - strand at 5035.579 kb on - strand at 5035.579 kb on - strand at 5035.579 kb on - strand at 5035.579 kb on - strand at 5035.579 kb on - strand at 5035.579 kb on - strand at 5035.579 kb on - strand at 5035.579 kb on - strand at 5035.579 kb on - strand at 5035.579 kb on - strand at 5035.589 kb on + strand at 5035.601 kb on + strand at 5035.613 kb on + strand at 5035.613 kb on + strand at 5035.614 kb on - strand at 5035.615 kb on + strand at 5035.615 kb on + strand at 5035.615 kb on + strand at 5035.616 kb on - strand at 5035.616 kb on - strand at 5035.616 kb on - strand at 5035.616 kb on - strand at 5035.616 kb on - strand at 5035.634 kb on + strand at 5035.634 kb on + strand at 5035.635 kb on - strand at 5035.671 kb on + strand at 5035.672 kb on - strand at 5035.672 kb on - strand at 5035.672 kb on - strand at 5035.678 kb on + strand at 5035.678 kb on + strand at 5035.678 kb on + strand at 5035.678 kb on + strand at 5035.678 kb on + strand at 5035.678 kb on + strand at 5035.678 kb on + strand at 5035.678 kb on + strand at 5035.678 kb on + strand at 5035.679 kb on - strand at 5035.679 kb on - strand at 5035.679 kb on - strand at 5035.679 kb on - strand at 5035.679 kb on - strand at 5035.679 kb on - strand at 5035.679 kb on - strand at 5035.679 kb on - strand at 5035.679 kb on - strand at 5035.679 kb on - strand at 5035.679 kb on - strand at 5035.679 kb on - strand at 5035.723 kb on - strand at 5035.830 kb on + strand, within PFLU_RS22395 at 5035.831 kb on - strand, within PFLU_RS22395 at 5035.897 kb on + strand, within PFLU_RS22395 at 5035.897 kb on + strand, within PFLU_RS22395 at 5035.898 kb on - strand, within PFLU_RS22395 at 5035.898 kb on - strand, within PFLU_RS22395 at 5035.898 kb on - strand, within PFLU_RS22395 at 5035.904 kb on + strand, within PFLU_RS22395 at 5035.904 kb on + strand, within PFLU_RS22395 at 5035.904 kb on + strand, within PFLU_RS22395 at 5035.904 kb on + strand, within PFLU_RS22395 at 5035.904 kb on + strand, within PFLU_RS22395 at 5035.905 kb on - strand, within PFLU_RS22395 at 5035.905 kb on - strand, within PFLU_RS22395 at 5035.905 kb on - strand, within PFLU_RS22395 at 5035.905 kb on - strand, within PFLU_RS22395 at 5036.299 kb on + strand, within PFLU_RS22395 at 5036.299 kb on + strand, within PFLU_RS22395 at 5036.299 kb on + strand, within PFLU_RS22395 at 5036.299 kb on + strand, within PFLU_RS22395 at 5036.299 kb on + strand, within PFLU_RS22395 at 5036.299 kb on + strand, within PFLU_RS22395 at 5036.299 kb on + strand, within PFLU_RS22395 at 5036.299 kb on + strand, within PFLU_RS22395 at 5036.299 kb on + strand, within PFLU_RS22395 at 5036.299 kb on + strand, within PFLU_RS22395 at 5036.300 kb on - strand, within PFLU_RS22395 at 5036.300 kb on - strand, within PFLU_RS22395 at 5036.300 kb on - strand, within PFLU_RS22395 at 5036.300 kb on - strand, within PFLU_RS22395 at 5036.300 kb on - strand, within PFLU_RS22395 at 5036.300 kb on - strand, within PFLU_RS22395 at 5036.388 kb on + strand at 5036.388 kb on + strand at 5036.440 kb on + strand at 5036.441 kb on - strand at 5036.456 kb on + strand at 5036.457 kb on - strand at 5036.511 kb on - strand at 5036.512 kb on + strand at 5036.512 kb on + strand at 5036.512 kb on + strand at 5036.512 kb on + strand at 5036.512 kb on + strand at 5036.513 kb on - strand at 5036.513 kb on - strand at 5036.693 kb on + strand, within PFLU_RS22400 at 5036.693 kb on + strand, within PFLU_RS22400 at 5036.693 kb on + strand, within PFLU_RS22400 at 5036.693 kb on + strand, within PFLU_RS22400 at 5036.693 kb on + strand, within PFLU_RS22400 at 5036.694 kb on - strand, within PFLU_RS22400 at 5036.765 kb on + strand, within PFLU_RS22400 at 5036.766 kb on - strand, within PFLU_RS22400 at 5037.004 kb on + strand, within PFLU_RS22400 at 5037.005 kb on - strand, within PFLU_RS22400 at 5037.095 kb on + strand at 5037.095 kb on + strand at 5037.096 kb on - strand at 5037.103 kb on - strand at 5037.103 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Growth at pH8 and (C) D-Glucose remove 5,034,722 - PFLU_RS22385 0.74 +1.3 5,034,722 - PFLU_RS22385 0.74 -0.1 5,034,910 + PFLU_RS22385 0.87 +2.1 5,034,910 + PFLU_RS22385 0.87 -0.8 5,034,911 - PFLU_RS22385 0.87 -0.5 5,034,989 + +1.1 5,034,990 - -1.9 5,034,990 - +0.5 5,035,042 + +0.5 5,035,043 - +0.5 5,035,084 + +1.4 5,035,084 + +1.9 5,035,084 + -0.5 5,035,084 + -0.0 5,035,084 + +0.4 5,035,084 + +2.5 5,035,084 + +2.2 5,035,084 + -0.8 5,035,084 + +1.5 5,035,084 + +1.9 5,035,084 + +0.8 5,035,084 + +0.7 5,035,084 + -1.3 5,035,085 - -0.8 5,035,085 - +0.8 5,035,085 - +0.5 5,035,085 - +1.3 5,035,085 - +0.3 5,035,085 - +1.2 5,035,088 + +1.8 5,035,088 + +0.7 5,035,088 + +1.0 5,035,088 + -1.3 5,035,088 + +1.7 5,035,089 - +0.2 5,035,089 - -0.5 5,035,089 - -1.1 5,035,089 - -1.1 5,035,131 + +0.4 5,035,131 + -0.1 5,035,132 - -3.5 5,035,132 - +1.4 5,035,246 - PFLU_RS22390 0.34 +0.6 5,035,354 - PFLU_RS22390 0.57 +0.9 5,035,413 + PFLU_RS22390 0.70 +1.2 5,035,413 + PFLU_RS22390 0.70 -1.4 5,035,414 - PFLU_RS22390 0.70 +0.1 5,035,449 + PFLU_RS22390 0.77 -0.6 5,035,450 - PFLU_RS22390 0.78 +1.5 5,035,535 + -0.3 5,035,535 + +1.6 5,035,535 + -0.4 5,035,535 + +0.8 5,035,536 - +1.2 5,035,536 - +1.5 5,035,536 - +1.5 5,035,536 - +0.2 5,035,536 - -1.1 5,035,536 - +0.4 5,035,543 + +1.1 5,035,543 + +0.9 5,035,543 + +1.4 5,035,543 + -2.1 5,035,544 - +3.0 5,035,544 - -1.3 5,035,544 - -2.4 5,035,544 - +1.2 5,035,545 + +0.7 5,035,545 + +0.9 5,035,546 - -1.8 5,035,546 - +0.6 5,035,570 + -1.3 5,035,570 + +2.2 5,035,571 - -0.6 5,035,571 - -0.7 5,035,571 - +0.6 5,035,574 + +0.8 5,035,574 + +1.3 5,035,574 + +0.7 5,035,574 + -3.2 5,035,574 + +1.0 5,035,574 + +0.6 5,035,574 + +0.2 5,035,574 + +0.6 5,035,574 + -1.9 5,035,574 + +1.5 5,035,574 + +1.7 5,035,574 + +0.9 5,035,574 + -0.4 5,035,574 + +0.5 5,035,574 + -0.2 5,035,574 + +1.0 5,035,574 + +1.0 5,035,574 + +0.1 5,035,575 - +0.5 5,035,575 - -0.9 5,035,575 - +1.4 5,035,575 - +1.3 5,035,575 - +2.6 5,035,575 - +0.2 5,035,575 - +0.2 5,035,575 - +0.9 5,035,575 - +1.3 5,035,575 - -0.7 5,035,575 - +0.3 5,035,575 - -2.7 5,035,575 - -0.7 5,035,575 - +1.2 5,035,575 - +1.3 5,035,575 - +0.1 5,035,575 - +2.9 5,035,575 - -1.4 5,035,575 - +1.0 5,035,575 - +0.1 5,035,578 + -1.5 5,035,578 + -0.1 5,035,578 + -0.1 5,035,578 + -1.5 5,035,578 + -0.1 5,035,578 + -1.1 5,035,578 + -0.3 5,035,579 - +1.7 5,035,579 - -0.5 5,035,579 - -2.4 5,035,579 - +1.8 5,035,579 - -2.7 5,035,579 - +2.7 5,035,579 - -0.5 5,035,579 - +0.8 5,035,579 - +0.8 5,035,579 - -1.7 5,035,579 - +0.0 5,035,579 - -2.4 5,035,579 - +0.1 5,035,579 - +0.3 5,035,579 - +2.0 5,035,579 - +1.1 5,035,579 - +0.5 5,035,579 - +0.7 5,035,579 - +0.7 5,035,589 + +0.1 5,035,601 + +0.8 5,035,613 + -0.7 5,035,613 + +2.5 5,035,614 - -1.9 5,035,615 + +0.6 5,035,615 + +3.8 5,035,615 + +3.1 5,035,616 - -0.3 5,035,616 - +0.3 5,035,616 - -0.3 5,035,616 - +0.9 5,035,616 - -0.3 5,035,634 + -2.1 5,035,634 + -0.5 5,035,635 - +0.6 5,035,671 + +0.2 5,035,672 - -1.8 5,035,672 - +0.0 5,035,672 - -0.5 5,035,678 + -1.9 5,035,678 + +1.0 5,035,678 + -0.5 5,035,678 + -0.7 5,035,678 + -1.1 5,035,678 + -1.9 5,035,678 + -0.3 5,035,678 + -1.1 5,035,678 + +0.1 5,035,679 - -1.7 5,035,679 - +2.1 5,035,679 - +1.7 5,035,679 - -0.8 5,035,679 - -1.9 5,035,679 - -0.8 5,035,679 - -2.3 5,035,679 - +1.2 5,035,679 - +0.6 5,035,679 - -2.3 5,035,679 - +1.2 5,035,679 - +0.9 5,035,723 - +2.5 5,035,830 + PFLU_RS22395 0.17 -0.5 5,035,831 - PFLU_RS22395 0.17 -2.1 5,035,897 + PFLU_RS22395 0.26 -1.1 5,035,897 + PFLU_RS22395 0.26 -1.3 5,035,898 - PFLU_RS22395 0.26 +2.5 5,035,898 - PFLU_RS22395 0.26 -0.5 5,035,898 - PFLU_RS22395 0.26 +1.5 5,035,904 + PFLU_RS22395 0.27 +0.5 5,035,904 + PFLU_RS22395 0.27 -1.9 5,035,904 + PFLU_RS22395 0.27 -0.1 5,035,904 + PFLU_RS22395 0.27 -0.1 5,035,904 + PFLU_RS22395 0.27 -0.8 5,035,905 - PFLU_RS22395 0.27 -0.5 5,035,905 - PFLU_RS22395 0.27 -0.1 5,035,905 - PFLU_RS22395 0.27 +3.1 5,035,905 - PFLU_RS22395 0.27 +1.5 5,036,299 + PFLU_RS22395 0.80 +3.5 5,036,299 + PFLU_RS22395 0.80 -2.5 5,036,299 + PFLU_RS22395 0.80 -0.5 5,036,299 + PFLU_RS22395 0.80 -0.5 5,036,299 + PFLU_RS22395 0.80 -0.1 5,036,299 + PFLU_RS22395 0.80 -1.6 5,036,299 + PFLU_RS22395 0.80 -0.8 5,036,299 + PFLU_RS22395 0.80 -0.1 5,036,299 + PFLU_RS22395 0.80 -0.8 5,036,299 + PFLU_RS22395 0.80 +2.7 5,036,300 - PFLU_RS22395 0.81 +3.8 5,036,300 - PFLU_RS22395 0.81 +0.5 5,036,300 - PFLU_RS22395 0.81 -0.5 5,036,300 - PFLU_RS22395 0.81 -0.1 5,036,300 - PFLU_RS22395 0.81 -0.2 5,036,300 - PFLU_RS22395 0.81 -0.1 5,036,388 + +0.5 5,036,388 + -1.1 5,036,440 + +1.1 5,036,441 - -0.2 5,036,456 + +1.1 5,036,457 - -2.6 5,036,511 - +0.7 5,036,512 + -1.6 5,036,512 + +1.5 5,036,512 + -0.5 5,036,512 + -1.3 5,036,512 + -1.4 5,036,513 - -0.5 5,036,513 - +1.0 5,036,693 + PFLU_RS22400 0.26 -1.5 5,036,693 + PFLU_RS22400 0.26 +1.5 5,036,693 + PFLU_RS22400 0.26 +1.0 5,036,693 + PFLU_RS22400 0.26 -2.5 5,036,693 + PFLU_RS22400 0.26 -1.6 5,036,694 - PFLU_RS22400 0.26 -0.8 5,036,765 + PFLU_RS22400 0.39 +1.1 5,036,766 - PFLU_RS22400 0.40 -1.1 5,037,004 + PFLU_RS22400 0.83 +0.6 5,037,005 - PFLU_RS22400 0.83 -1.1 5,037,095 + -3.1 5,037,095 + -1.6 5,037,096 - +0.2 5,037,103 - +0.4 5,037,103 - +1.5
Or see this region's nucleotide sequence