Experiment: Growth at pH8 and (C) D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFLU_RS19905 and PFLU_RS19910 overlap by 4 nucleotides PFLU_RS19910 and PFLU_RS19915 overlap by 4 nucleotides PFLU_RS19915 and PFLU_RS19920 overlap by 4 nucleotides PFLU_RS19920 and PFLU_RS19925 overlap by 4 nucleotides
PFLU_RS19900: PFLU_RS19900 - general secretion pathway protein GspM, at 4,505,079 to 4,505,690
_RS19900
PFLU_RS19905: PFLU_RS19905 - general secretion pathway protein GspL, at 4,505,665 to 4,506,684
_RS19905
PFLU_RS19910: PFLU_RS19910 - hypothetical protein, at 4,506,681 to 4,507,406
_RS19910
PFLU_RS19915: PFLU_RS19915 - prepilin-type N-terminal cleavage/methylation domain-containing protein, at 4,507,403 to 4,508,032
_RS19915
PFLU_RS19920: PFLU_RS19920 - prepilin-type N-terminal cleavage/methylation domain-containing protein, at 4,508,029 to 4,508,391
_RS19920
PFLU_RS19925: PFLU_RS19925 - type II secretion system protein, at 4,508,388 to 4,508,819
_RS19925
Position (kb) 4506
4507
4508 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4505.970 kb on - strand, within PFLU_RS19905 at 4506.365 kb on + strand, within PFLU_RS19905 at 4506.366 kb on - strand, within PFLU_RS19905 at 4506.366 kb on - strand, within PFLU_RS19905 at 4506.366 kb on - strand, within PFLU_RS19905 at 4506.366 kb on - strand, within PFLU_RS19905 at 4506.430 kb on - strand, within PFLU_RS19905 at 4506.484 kb on + strand, within PFLU_RS19905 at 4506.548 kb on + strand, within PFLU_RS19905 at 4506.548 kb on + strand, within PFLU_RS19905 at 4506.548 kb on + strand, within PFLU_RS19905 at 4506.548 kb on + strand, within PFLU_RS19905 at 4506.549 kb on - strand, within PFLU_RS19905 at 4506.549 kb on - strand, within PFLU_RS19905 at 4506.549 kb on - strand, within PFLU_RS19905 at 4506.549 kb on - strand, within PFLU_RS19905 at 4506.549 kb on - strand, within PFLU_RS19905 at 4506.549 kb on - strand, within PFLU_RS19905 at 4506.549 kb on - strand, within PFLU_RS19905 at 4506.549 kb on - strand, within PFLU_RS19905 at 4506.678 kb on + strand at 4506.678 kb on + strand at 4506.678 kb on + strand at 4506.678 kb on + strand at 4506.679 kb on - strand at 4506.679 kb on - strand at 4506.679 kb on - strand at 4506.679 kb on - strand at 4506.679 kb on - strand at 4506.679 kb on - strand at 4506.696 kb on + strand at 4506.696 kb on + strand at 4506.696 kb on + strand at 4506.696 kb on + strand at 4506.696 kb on + strand at 4506.697 kb on - strand at 4506.697 kb on - strand at 4506.697 kb on - strand at 4506.706 kb on + strand at 4506.739 kb on - strand at 4506.937 kb on + strand, within PFLU_RS19910 at 4506.981 kb on + strand, within PFLU_RS19910 at 4507.112 kb on - strand, within PFLU_RS19910 at 4507.112 kb on - strand, within PFLU_RS19910 at 4507.501 kb on - strand, within PFLU_RS19915 at 4507.573 kb on - strand, within PFLU_RS19915 at 4507.900 kb on + strand, within PFLU_RS19915 at 4507.903 kb on - strand, within PFLU_RS19915 at 4508.008 kb on + strand at 4508.008 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Growth at pH8 and (C) D-Glucose remove 4,505,970 - PFLU_RS19905 0.30 -1.0 4,506,365 + PFLU_RS19905 0.69 -0.2 4,506,366 - PFLU_RS19905 0.69 +1.8 4,506,366 - PFLU_RS19905 0.69 -3.4 4,506,366 - PFLU_RS19905 0.69 +1.1 4,506,366 - PFLU_RS19905 0.69 +0.9 4,506,430 - PFLU_RS19905 0.75 -0.4 4,506,484 + PFLU_RS19905 0.80 +1.3 4,506,548 + PFLU_RS19905 0.87 -3.2 4,506,548 + PFLU_RS19905 0.87 +0.3 4,506,548 + PFLU_RS19905 0.87 -0.0 4,506,548 + PFLU_RS19905 0.87 +0.1 4,506,549 - PFLU_RS19905 0.87 +0.4 4,506,549 - PFLU_RS19905 0.87 -2.5 4,506,549 - PFLU_RS19905 0.87 +0.6 4,506,549 - PFLU_RS19905 0.87 -0.1 4,506,549 - PFLU_RS19905 0.87 +1.5 4,506,549 - PFLU_RS19905 0.87 -1.9 4,506,549 - PFLU_RS19905 0.87 +0.6 4,506,549 - PFLU_RS19905 0.87 -0.4 4,506,678 + +2.0 4,506,678 + -2.7 4,506,678 + +2.1 4,506,678 + +0.3 4,506,679 - +1.1 4,506,679 - -0.5 4,506,679 - -1.3 4,506,679 - -2.3 4,506,679 - +0.7 4,506,679 - -0.3 4,506,696 + +1.2 4,506,696 + -1.5 4,506,696 + -1.5 4,506,696 + -2.8 4,506,696 + -2.0 4,506,697 - +0.2 4,506,697 - -1.9 4,506,697 - +1.5 4,506,706 + -0.6 4,506,739 - +1.0 4,506,937 + PFLU_RS19910 0.35 +1.1 4,506,981 + PFLU_RS19910 0.41 -0.5 4,507,112 - PFLU_RS19910 0.59 -1.3 4,507,112 - PFLU_RS19910 0.59 -2.3 4,507,501 - PFLU_RS19915 0.16 +0.0 4,507,573 - PFLU_RS19915 0.27 -2.3 4,507,900 + PFLU_RS19915 0.79 +0.2 4,507,903 - PFLU_RS19915 0.79 +0.7 4,508,008 + -0.5 4,508,008 + -0.9
Or see this region's nucleotide sequence